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Linking biomedical entities is an essential aspect in biomedical natural language processing tasks, such as text mining and question answering. However, a difficulty of linking the biomedical entities using current large language models…

计算与语言 · 计算机科学 2023-08-29 Xi Yan , Cedric Möller , Ricardo Usbeck

Nature has inspired various ground-breaking technological developments in applications ranging from robotics to aerospace engineering and the manufacturing of medical devices. However, accessing the information captured in scientific…

计算与语言 · 计算机科学 2020-05-27 Ruben Kruiper , Julian F. V. Vincent , Jessica Chen-Burger , Marc P. Y. Desmulliez , Ioannis Konstas

Background: The detection and extraction of causality from natural language sentences have shown great potential in various fields of application. The field of requirements engineering is eligible for multiple reasons: (1) requirements…

软件工程 · 计算机科学 2023-12-13 Julian Frattini , Maximilian Junker , Michael Unterkalmsteiner , Daniel Mendez

Relation Extraction (RE) aims to label relations between groups of marked entities in raw text. Most current RE models learn context-aware representations of the target entities that are then used to establish relation between them. This…

计算与语言 · 计算机科学 2019-02-26 Gaurav Singh , Parminder Bhatia

Relation Extraction (RE) is a fundamental task of information extraction, which has attracted a large amount of research attention. Previous studies focus on extracting the relations within a sentence or document, while currently…

计算与语言 · 计算机科学 2022-11-01 Fengqi Wang , Fei Li , Hao Fei , Jingye Li , Shengqiong Wu , Fangfang Su , Wenxuan Shi , Donghong Ji , Bo Cai

In recent years, there has been an increasing number of frameworks developed for biomedical entity and relation extraction. This research effort aims to address the accelerating growth in biomedical publications and the intricate nature of…

计算与语言 · 计算机科学 2024-08-14 Minh Nguyen , Phuong Le

Multimodal conversation, a crucial form of human communication, carries rich emotional content, making the exploration of the causes of emotions within it a research endeavor of significant importance. However, existing research on the…

计算与语言 · 计算机科学 2025-06-05 Lin Wang , Xiaocui Yang , Shi Feng , Daling Wang , Yifei Zhang , Zhitao Zhang

Temporal information extraction from unstructured text is essential for contextualizing events and deriving actionable insights, particularly in the medical domain. We address the task of extracting clinical events and their temporal…

计算与语言 · 计算机科学 2026-01-22 Rochana Chaturvedi , Peyman Baghershahi , Sourav Medya , Barbara Di Eugenio

This paper focuses on the problem of unsupervised relation extraction. Existing probabilistic generative model-based relation extraction methods work by extracting sentence features and using these features as inputs to train a generative…

计算与语言 · 计算机科学 2020-09-29 Chenhan Yuan , Ryan Rossi , Andrew Katz , Hoda Eldardiry

Evidence-based medicine, the practice in which healthcare professionals refer to the best available evidence when making decisions, forms the foundation of modern healthcare. However, it relies on labour-intensive systematic reviews, where…

计算与语言 · 计算机科学 2021-12-13 Jetsun Whitton , Anthony Hunter

Owing to the exponential rise in the electronic medical records, information extraction in this domain is becoming an important area of research in recent years. Relation extraction between the medical concepts such as medical problem,…

计算与语言 · 计算机科学 2019-03-26 Dhanachandra Ningthoujam , Shweta Yadav , Pushpak Bhattacharyya , Asif Ekbal

We introduce a biomedical information extraction (IE) pipeline that extracts biological relationships from text and demonstrate that its components, such as named entity recognition (NER) and relation extraction (RE), outperform…

机器学习 · 计算机科学 2020-11-13 Jupinder Parmar , William Koehler , Martin Bringmann , Katharina Sophia Volz , Berk Kapicioglu

Contextual information is widely considered for NLP and knowledge discovery in life sciences since it highly influences the exact meaning of natural language. The scientific challenge is not only to extract such context data, but also to…

数据库 · 计算机科学 2020-01-24 Jens Dörpinghaus , Andreas Stefan , Bruce Schultz , Marc Jacobs

Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…

计算与语言 · 计算机科学 2020-09-21 Diana Sousa , Andre Lamurias , Francisco M. Couto

Large Language Models (LLMs) with reasoning capabilities have recently demonstrated strong potential in medical Question Answering (QA). Existing approaches are largely English-focused and primarily rely on distillation from general-purpose…

计算与语言 · 计算机科学 2026-03-31 Pietro Ferrazzi , Aitor Soroa , Rodrigo Agerri

Event Argument extraction refers to the task of extracting structured information from unstructured text for a particular event of interest. The existing works exhibit poor capabilities to extract causal event arguments like Reason and…

计算与语言 · 计算机科学 2021-05-04 Debanjana Kar , Sudeshna Sarkar , Pawan Goyal

Biomedical entity linking maps textual mentions to concepts in structured knowledge bases such as UMLS or SNOMED CT. Most existing systems link each mention independently, using only the mention or its surrounding sentence. This ignores…

计算与语言 · 计算机科学 2026-05-14 Adam Remaki , Xavier Tannier , Christel Gérardin

The COVID-19 pandemic has spawned a diverse body of scientific literature that is challenging to navigate, stimulating interest in automated tools to help find useful knowledge. We pursue the construction of a knowledge base (KB) of…

Industry-wide nuclear power plant operating experience is a critical source of raw data for performing parameter estimations in reliability and risk models. Much operating experience information pertains to failure events and is stored as…

计算与语言 · 计算机科学 2024-04-23 Shahidur Rahoman Sohag , Sai Zhang , Min Xian , Shoukun Sun , Fei Xu , Zhegang Ma

In recent years, biomedical event extraction has been dominated by complicated pipeline and joint methods, which need to be simplified. In addition, existing work has not effectively utilized trigger word information explicitly. Hence, we…

计算与语言 · 计算机科学 2024-08-15 Gongchi Chen , Pengchao Wu , Jinghang Gu , Longhua Qian , Guodong Zhou