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The glassy cytoplasm, crowded with bio-macromolecules, is fluidized in living cells by mechanical energy derived from metabolism. Characterizing the living cytoplasm as a non-equilibrium system is crucial in elucidating the intricate…

生物物理 · 物理学 2023-07-28 K. Umeda , K. Nishizawa , W. Nagao , S. Inokuchi , Y. Sugino , H. Ebata , D. Mizuno

We introduce a general theoretical framework to study the shape dynamics of actively growing and remodeling surfaces. Using this framework we develop a physical model for growing bacterial cell walls and study the interplay of cell shape…

生物物理 · 物理学 2016-04-08 Shiladitya Banerjee , Norbert F. Scherer , Aaron R. Dinner

In the Drosophila melanogaster egg chamber, the collective migration of border cells toward the oocyte is guided by spatial gradients of chemoattractants. While cellular responses to these cues are well characterized, the spatial…

偏微分方程分析 · 数学 2026-04-03 Naghmeh Akhavan , Alexander George , Michelle Starz-Gaiano , Bradford E. Peercy

The study of cells' dynamical properties is essential to a better understanding of several physiological processes. These properties are directly associated with cells' mechanical parameters experimentally achieved through physical stress.…

软凝聚态物质 · 物理学 2022-01-26 G. Ourique , E. F. Teixeira , L. G. Brunnet

Biological functions in living cells are controlled by protein interaction and genetic networks. These molecular networks should be dynamically stable against various fluctuations which are inevitable in the living world. In this paper, we…

分子网络 · 定量生物学 2009-11-13 Yuping Zhang , Minping Qian , Qi Ouyang , Minghua Deng , Fangting Li , Chao Tang

The mechanosensitivity of cells, which determines how they are able to respond to mechanical signals received from their environment, is crucial for the functioning of all biological systems. In experiments, cells placed on cyclically…

生物物理 · 物理学 2019-01-17 John J. Molina , Ryoichi Yamamoto

The mechanical behaviour and symmetry-breaking shape deformation of red blood cells subjected to shear flows is used to demonstrate that far from being random fluids, both the membrane and cytoplasm of every biological cell undergo…

综合物理 · 物理学 2007-05-23 Juanita Lofthouse

A continuum model of epithelial tissue mechanics was formulated using cellular-level mechanical ingredients and cell morphogenetic processes, including cellular shape changes and cellular rearrangements. This model can include finite…

组织与器官 · 定量生物学 2017-09-06 Shuji Ishihara , Philippe Marcq , Kaoru Sugimura

The importance of mesoscale fluctuations in flowing amorphous materials is widely accepted, without a clear understanding of their role. We propose a mean-field elastoplastic model that admits both stress and strain-rate fluctuations, and…

软凝聚态物质 · 物理学 2022-05-09 Timothy Ekeh , Étienne Fodor , Suzanne M. Fielding , Michael E. Cates

Many animal cells change their shape depending on the stiffness of the substrate on which they are cultured: they assume small, rounded shapes in soft ECMs, they elongate within stiffer ECMs, and flatten out on hard substrates. Cells tend…

细胞行为 · 定量生物学 2019-06-24 Elisabeth G. Rens , Roeland M. H. Merks

Cellular transformations which involve a significant phenotypical change of the cell's state use bistable biochemical switches as underlying decision systems. In this work, we aim at linking cellular decisions taking place on a time scale…

细胞行为 · 定量生物学 2010-05-11 Steffen Waldherr , Jingbo Wu , Frank Allgöwer

Migratory and tissue resident cells exhibit highly branched morphologies to perform their function and to adapt to the microenvironment. Immune cells, for example, display transient branched shapes while exploring the surrounding tissues.…

生物物理 · 物理学 2024-04-02 Jiayi Liu , Javier Boix-Campos , Jonathan E. Ron , Johan M. Kux , Nir S. Gov , Pablo J. Sáez

The one-dimensional crawling movement of a cell is considered in this theoretical study. Our active gel model shows that for a cell with weakly mechanosensitive adhesion complexes, as myosin contractility increases, a cell starts to move at…

软凝聚态物质 · 物理学 2023-01-05 Jen-Yu Lo , Yuan-Heng Tseng , Hsuan-Yi Chen

The phenomenological model for cell shape deformation and cell migration (Chen et.al. 2018; Vermolen and Gefen 2012) is extended with the incorporation of cell traction forces and the evolution of cell equilibrium shapes as a result of cell…

细胞行为 · 定量生物学 2021-04-27 Qiyao Peng , Fred Vermolen , Daphne Weihs

This paper deals with the adhesive interaction arising between a cell circulating in the blood flow and the vascular wall. The purpose of this work is to investigate the effect of the blood flow velocity on the cell dynamics, and in…

偏微分方程分析 · 数学 2019-12-13 Christèle Etchegaray , Nicolas Meunier

Many organisms have an elastic skeleton that consists of a closed shell of epithelial cells that is filled with fluid, and can actively regulate both elastic forces in the shell and hydrostatic pressure inside it. In this work we introduce…

软凝聚态物质 · 物理学 2023-10-13 Ajoy Maji , Yitzhak Rabin

The cell cortex is a thin layer beneath the plasma membrane that gives animal cells mechanical resistance and drives most of their shape changes, from migration, division to multicellular morphogenesis. It is mainly composed of actin…

生物物理 · 物理学 2022-05-04 Hudson Borja da Rocha , Jérémy Bleyer , Hervé Turlier

Simple active models of matter recapitulate complex biological phenomena. The out-of-equilibrium nature of these models, however, often makes them beyond the reach of first-principle descriptions. This limitation is particularly perplexing…

软凝聚态物质 · 物理学 2025-11-07 Mingyuan Zheng , Dmytro Khomenko , Patrick Charbonneau

The locomotion of flexible membrane-like organisms on top of curved surfaces appears in different contexts and scales. Still, such dynamics have not yet been quantitatively modeled and no realization of such motion in manmade systems has…

软凝聚态物质 · 物理学 2024-02-27 Omri Y. Cohen , Yael Klein , Eran Sharon

We measure different contributions to entropy production in a living functional epithelial tissue. We do this by extracting the functional dynamics of development while at the same time quantifying fluctuations. Using the translucent…

软凝聚态物质 · 物理学 2023-01-25 Mark Olenik , Jake Turley , Stephen Cross , Helen Weavers , Paul Martin , Isaac Chenchiah , Tanniemola Liverpool