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Due to climate-induced changes, many habitats are experiencing range shifts away from their traditional geographic locations (Piguet, 2011). We propose a solution to accurately model whether bird species are present in a specific habitat…

人工智能 · 计算机科学 2025-07-16 Emir Durakovic , Min-Hong Shih

Network inference is a major field of interest for the ecological community, especially in light of the high cost and difficulty of manual observation, and easy availability of remote, long term monitoring data. In addition, comparing…

定量方法 · 定量生物学 2021-03-30 Anshuman Swain , Travis Byrum , Zhaoyi Zhuang , Luke Perry , Michael Lin , William Fagan

DNA-based biodiversity surveys involve collecting physical samples from survey sites and assaying the contents in the laboratory to detect species via their diagnostic DNA sequences. DNA-based surveys are increasingly being adopted for…

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Recent technological advances and long-term data studies provide interaction data that can be modelled through dynamic networks, i.e a sequence of different snapshots of an evolving ecological network. Most often time is the parameter along…

种群与进化 · 定量生物学 2017-01-06 Vincent Miele , Catherine Matias

Internet mapping projects generally consist in sampling the network from a limited set of sources by using traceroute probes. This methodology, akin to the merging of spanning trees from the different sources to a set of destinations, leads…

网络与互联网体系结构 · 计算机科学 2011-11-09 Fabien Viger , Alain Barrat , Luca Dall'Asta , Cun-Hui Zhang , Eric D. Kolaczyk

Applying machine learning models to meteorological data brings many opportunities to the Geosciences field, such as predicting future weather conditions more accurately. In recent years, modeling meteorological data with deep neural…

机器学习 · 计算机科学 2020-11-11 Rafaela Castro , Yania M. Souto , Eduardo Ogasawara , Fabio Porto , Eduardo Bezerra

Spiking neural networks (SNNs) have ultra-low energy consumption and high biological plausibility due to their binary and bio-driven nature compared with artificial neural networks (ANNs). While previous research has primarily focused on…

神经与进化计算 · 计算机科学 2023-12-06 Jiahang Cao , Ziqing Wang , Hanzhong Guo , Hao Cheng , Qiang Zhang , Renjing Xu

The stochastic block model (SBM) is a probabilistic model for community structure in networks. Typically, only the adjacency matrix is used to perform SBM parameter inference. In this paper, we consider circumstances in which nodes have an…

社会与信息网络 · 计算机科学 2018-03-09 Natalie Stanley , Thomas Bonacci , Roland Kwitt , Marc Niethammer , Peter J. Mucha

Conditional density estimation (CDE) is the task of estimating the probability of an event conditioned on some inputs. A neural network (NN) can also be used to compute the output distribution for continuous-domain, which can be viewed as…

机器学习 · 计算机科学 2021-12-30 Bing Chen , Mazharul Islam , Jisuo Gao , Lin Wang

It is well-known that deep neural networks (DNNs) have shown remarkable success in many fields. However, when adding an imperceptible magnitude perturbation on the model input, the model performance might get rapid decrease. To address this…

机器学习 · 计算机科学 2022-01-04 Hao Yang , Min Wang , Zhengfei Yu , Yun Zhou

The Nested Dirichlet Distribution (NDD) provides a flexible alternative to the Dirichlet distribution for modeling compositional data, relaxing constraints on component variances and correlations through a hierarchical tree structure. While…

统计方法学 · 统计学 2026-01-16 Jacob A. Turner , Monnie McGee , Bianca A. Luedeker

Complex systems which can be represented in the form of static and dynamic graphs arise in different fields, e.g. communication, engineering and industry. One of the interesting problems in analysing dynamic network structures is to monitor…

机器学习 · 计算机科学 2020-11-13 Anna Malinovskaya , Philipp Otto , Torben Peters

Estimating the geographical range of a species from sparse observations is a challenging and important geospatial prediction problem. Given a set of locations where a species has been observed, the goal is to build a model to predict…

Stochastic kinetic models (SKMs) are increasingly used to account for the inherent stochasticity exhibited by interacting populations of species in areas such as epidemiology, population ecology and systems biology. Species numbers are…

统计计算 · 统计学 2023-04-06 Tom E. Lowe , Andrew Golightly , Chris Sherlock

WhyWhere is a new ecological niche modeling (ENM) algorithm for mapping and explaining the distribution of species. The algorithm uses image processing methods to efficiently sift through large amounts of data to find the few variables that…

定量方法 · 定量生物学 2007-05-23 David R. B. Stockwell

This work concerns the evolutionary approaches to distributed stochastic black-box optimization, in which each worker can individually solve an approximation of the problem with nature-inspired algorithms. We propose a distributed evolution…

神经与进化计算 · 计算机科学 2022-04-12 Xiaoyu He , Zibin Zheng , Chuan Chen , Yuren Zhou , Chuan Luo , Qingwei Lin

Convolutional Neural Networks (CNNs) have recently emerged as the dominant model in computer vision. If provided with enough training data, they predict almost any visual quantity. In a discrete setting, such as classification, CNNs are not…

计算机视觉与模式识别 · 计算机科学 2015-11-25 Deepak Pathak , Philipp Krähenbühl , Stella X. Yu , Trevor Darrell

Citizen science biodiversity data present great opportunities for ecology and conservation across vast spatial and temporal scales. However, the opportunistic nature of these data lacks the sampling structure required by modeling…

机器学习 · 计算机科学 2025-04-15 Nahian Ahmed , Mark Roth , Tyler A. Hallman , W. Douglas Robinson , Rebecca A. Hutchinson

We consider a distributed estimation method in a setting with heterogeneous streams of correlated data distributed across nodes in a network. In the considered approach, linear models are estimated locally (i.e., with only local data)…

机器学习 · 计算机科学 2021-02-11 Lingzhou Hong , Alfredo Garcia , Ceyhun Eksin