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相关论文: Biomedical Named Entity Recognition at Scale

200 篇论文

Spoken Named Entity Recognition (NER) aims to extract named entities from speech and categorise them into types like person, location, organization, etc. In this work, we present VietMed-NER - the first spoken NER dataset in the medical…

音频与语音处理 · 电气工程与系统科学 2025-04-03 Khai Le-Duc , David Thulke , Hung-Phong Tran , Long Vo-Dang , Khai-Nguyen Nguyen , Truong-Son Hy , Ralf Schlüter

Named Entity Recognition (NER) and Relation Extraction (RE) are essential tools in distilling knowledge from biomedical literature. This paper presents our findings from participating in BioNLP Shared Tasks 2019. We addressed Named Entity…

计算与语言 · 计算机科学 2019-10-09 Usama Yaseen , Pankaj Gupta , Hinrich Schütze

Motivation: Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of…

计算与语言 · 计算机科学 2023-05-23 Liangping Ding , Giovanni Colavizza , Zhixiong Zhang

Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

计算与语言 · 计算机科学 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Named Entity Recognition (NER) is a fundamental task in Natural Language Processing, concerned with identifying spans of text expressing references to entities. NER research is often focused on flat entities only (flat NER), ignoring the…

计算与语言 · 计算机科学 2020-06-16 Juntao Yu , Bernd Bohnet , Massimo Poesio

Named Entity Recognition (NER) is a machine learning task that traditionally relies on supervised learning and annotated data. Acquiring such data is often a challenge, particularly in specialized fields like medical, legal, and financial…

Named entity recognition (NER) is a vital task in spoken language understanding, which aims to identify mentions of named entities in text e.g., from transcribed speech. Existing neural models for NER rely mostly on dedicated word-level…

计算与语言 · 计算机科学 2019-09-24 Abdalghani Abujabal , Judith Gaspers

Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

信息检索 · 计算机科学 2024-02-07 Martin Lentschat , Cyril Labbé , Ran Cheng

Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

计算与语言 · 计算机科学 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Recognizing entities in texts is a central need in many information-seeking scenarios, and indeed, Named Entity Recognition (NER) is arguably one of the most successful examples of a widely adopted NLP task and corresponding NLP technology.…

计算与语言 · 计算机科学 2023-10-24 Uri Katz , Matan Vetzler , Amir DN Cohen , Yoav Goldberg

Named-entity recognition (NER) detects texts with predefined semantic labels and is an essential building block for natural language processing (NLP). Notably, recent NER research focuses on utilizing massive extra data, including…

计算与语言 · 计算机科学 2023-05-09 Yuxiang Zhang , Junjie Wang , Xinyu Zhu , Tetsuya Sakai , Hayato Yamana

This study evaluated the effect of BioBERT in medical text processing for the task of medical named entity recognition. Through comparative experiments with models such as BERT, ClinicalBERT, SciBERT, and BlueBERT, the results showed that…

计算与语言 · 计算机科学 2024-12-12 Jiacheng Hu , Runyuan Bao , Yang Lin , Hanchao Zhang , Yanlin Xiang

Neural networks (NNs) have become the state of the art in many machine learning applications, especially in image and sound processing [1]. The same, although to a lesser extent [2,3], could be said in natural language processing (NLP)…

计算与语言 · 计算机科学 2019-07-30 Luka Gligic , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

Large Language Models (LLMs) have revolutionized various sectors, including healthcare where they are employed in diverse applications. Their utility is particularly significant in the context of rare diseases, where data scarcity,…

计算与语言 · 计算机科学 2024-08-20 Qiuhao Lu , Rui Li , Andrew Wen , Jinlian Wang , Liwei Wang , Hongfang Liu

Biomedical named entity recognition (NER) is a fundamental task in text mining of medical documents and has many applications. Deep learning based approaches to this task have been gaining increasing attention in recent years as their…

计算与语言 · 计算机科学 2018-08-16 Devendra Singh Sachan , Pengtao Xie , Mrinmaya Sachan , Eric P Xing

Named entity recognition (NER) is the task to identify mentions of rigid designators from text belonging to predefined semantic types such as person, location, organization etc. NER always serves as the foundation for many natural language…

计算与语言 · 计算机科学 2023-04-26 Jing Li , Aixin Sun , Jianglei Han , Chenliang Li

Clinical Named Entity Recognition (CNER) aims to identify and classify clinical terms such as diseases, symptoms, treatments, exams, and body parts in electronic health records, which is a fundamental and crucial task for clinical and…

计算与语言 · 计算机科学 2018-04-16 Qi Wang , Yuhang Xia , Yangming Zhou , Tong Ruan , Daqi Gao , Ping He

Supervised named entity recognition (NER) in the biomedical domain depends on large sets of annotated texts with the given named entities. The creation of such datasets can be time-consuming and expensive, while extraction of new entities…

计算与语言 · 计算机科学 2024-08-27 Miloš Košprdić , Nikola Prodanović , Adela Ljajić , Bojana Bašaragin , Nikola Milošević

Named Entity Recognition (NER) is an important task in natural language processing that aims to identify and extract key entities from unstructured text. We present a novel application of NER in plasma physics research articles and address…

计算与语言 · 计算机科学 2026-02-13 Muhammad Haris , Hans Höft , Markus M. Becker , Markus Stocker

For several purposes in Natural Language Processing (NLP), such as Information Extraction, Sentiment Analysis or Chatbot, Named Entity Recognition (NER) holds an important role as it helps to determine and categorize entities in text into…

计算与语言 · 计算机科学 2020-03-24 Thong Nguyen , Duy Nguyen , Pramod Rao