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Recent technological advancements in data acquisition tools allowed life scientists to acquire multimodal data from different biological application domains. Broadly categorized in three types (i.e., sequences, images, and signals), these…

定量方法 · 定量生物学 2020-03-03 Mufti Mahmud , M Shamim Kaiser , Amir Hussain

Many real world systems need to operate on heterogeneous information networks that consist of numerous interacting components of different types. Examples include systems that perform data analysis on biological information networks; social…

Molecular Relational Learning (MRL), aiming to understand interactions between molecular pairs, plays a pivotal role in advancing biochemical research. Recently, the adoption of large language models (LLMs), known for their vast knowledge…

定量方法 · 定量生物学 2024-06-11 Junfeng Fang , Shuai Zhang , Chang Wu , Zhengyi Yang , Zhiyuan Liu , Sihang Li , Kun Wang , Wenjie Du , Xiang Wang

Gene and protein networks are very important to model complex large-scale systems in molecular biology. Inferring or reverseengineering such networks can be defined as the process of identifying gene/protein interactions from experimental…

机器学习 · 计算机科学 2017-03-10 Stefano Beretta , Mauro Castelli , Ivo Goncalves , Ivan Merelli , Daniele Ramazzotti

Complex systems are often driven by higher-order interactions among multiple units, naturally represented as hypergraphs. Understanding dependency structures within these hypergraphs is crucial for understanding and predicting the behavior…

社会与信息网络 · 计算机科学 2025-05-29 John Hood , Caterina De Bacco , Aaron Schein

Discovering interaction effects on a response of interest is a fundamental problem faced in biology, medicine, economics, and many other scientific disciplines. In theory, Bayesian methods for discovering pairwise interactions enjoy many…

统计计算 · 统计学 2022-11-15 Raj Agrawal , Jonathan H. Huggins , Brian Trippe , Tamara Broderick

Graphical models are widely used to make inferences concerning interplay in multivariate systems. In many applications, data are collected from multiple related but nonidentical units whose underlying networks may differ but are likely to…

统计方法学 · 统计学 2014-12-04 Chris J. Oates , Jim Korkola , Joe W. Gray , Sach Mukherjee

Relational event network data are becoming increasingly available. Consequently, statistical models for such data have also surfaced. These models mainly focus on the analysis of single networks, while in many applications, multiple…

统计方法学 · 统计学 2023-06-08 Fabio Vieira , Roger Leenders , Daniel McFarland , Joris Mulder

Complex systems often involve higher-order interactions which require us to go beyond their description in terms of pairwise networks. Triadic interactions are a fundamental type of higher-order interaction that occurs when one node…

Eye gaze is considered a promising interaction modality in extende reality (XR) environments. However, determining selection intention from gaze data often requires additional manual selection techniques. We present a Bayesian-based machine…

人机交互 · 计算机科学 2024-11-12 Taewoo Jo , Ho Jung Lee , Sulim Chun , In-Kwon Lee

Causal learning from data has received much attention recently. Bayesian networks can be used to capture causal relationships. There, one recovers a weighted directed acyclic graph in which random variables are represented by vertices, and…

机器学习 · 计算机科学 2026-01-06 Pavel Rytir , Ales Wodecki , Georgios Korpas , Jakub Marecek

Multimodal datasets contain an enormous amount of relational information, which grows exponentially with the introduction of new modalities. Learning representations in such a scenario is inherently complex due to the presence of multiple…

机器学习 · 计算机科学 2019-09-24 Devanshu Arya , Stevan Rudinac , Marcel Worring

The convergence of statistical learning and molecular physics is transforming our approach to modeling biomolecular systems. Physics-informed machine learning (PIML) offers a systematic framework that integrates data-driven inference with…

生物大分子 · 定量生物学 2025-11-11 Aaryesh Deshpande

Intelligent robots require object-level scene understanding to reason about possible tasks and interactions with the environment. Moreover, many perception tasks such as scene reconstruction, image retrieval, or place recognition can…

计算机视觉与模式识别 · 计算机科学 2023-05-05 Cathrin Elich , Iro Armeni , Martin R. Oswald , Marc Pollefeys , Joerg Stueckler

While existing mathematical descriptions can accurately account for phenomena at microscopic scales (e.g. molecular dynamics), these are often high-dimensional, stochastic and their applicability over macroscopic time scales of physical…

机器学习 · 统计学 2016-09-08 P. S. Koutsourelakis , Elias Bilionis

With the explosion of digital data in recent years, continuously learning new tasks from a stream of data without forgetting previously acquired knowledge has become increasingly important. In this paper, we propose a new continual learning…

计算机视觉与模式识别 · 计算机科学 2021-03-09 Bo Zhao , Shixiang Tang , Dapeng Chen , Hakan Bilen , Rui Zhao

Metagenomics provides a powerful new tool set for investigating evolutionary interactions with the environment. However, an absence of model-based statistical methods means that researchers are often not able to make full use of this…

定量方法 · 定量生物学 2013-06-27 John O'Brien , Xavier Didelot , Zamin Iqbal , LucasAmenga-Etego , Bartu Ahiska , Daniel Falush

Understanding and interpreting how machine learning (ML) models make decisions have been a big challenge. While recent research has proposed various technical approaches to provide some clues as to how an ML model makes individual…

机器学习 · 计算机科学 2018-11-09 Wenbo Guo , Sui Huang , Yunzhe Tao , Xinyu Xing , Lin Lin

High-throughput data generation methods and machine learning (ML) algorithms have given rise to a new era of computational materials science by learning relationships among composition, structure, and properties and by exploiting such…

Recent advances in large pre-trained models showed promising results in few-shot learning. However, their generalization ability on two-dimensional Out-of-Distribution (OoD) data, i.e., correlation shift and diversity shift, has not been…

计算机视觉与模式识别 · 计算机科学 2025-04-23 Lin Zhu , Xinbing Wang , Chenghu Zhou , Nanyang Ye