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A significant amount of data held in Oncology Electronic Medical Records (EMRs) is contained in unstructured provider notes -- including but not limited to the chemotherapy (or cancer treatment) outcome, different biomarkers, the tumor's…

Retrieval-augmented learning based on radiology reports has emerged as a promising direction to improve performance on long-tail medical imaging tasks, such as rare disease detection in chest X-rays. Most existing methods rely on comparing…

机器学习 · 计算机科学 2025-08-28 Felix Nützel , Mischa Dombrowski , Bernhard Kainz

Healthcare data are generated in many different formats, which makes it difficult to integrate and reuse across institutions and studies. Standardisation is required to enable consistent large-scale analysis. The OMOP-CDM, developed by the…

定量方法 · 定量生物学 2025-11-13 Jacob Desmond , Ryan Wartmann , Chng Wei Lau , Steven Thomas , Paul M. Middleton , Jeewani Anupama Ginige

Biomedical ontologies, which comprehensively define concepts and relations for biomedical entities, are crucial for structuring and formalizing domain-specific information representations. Biomedical code mapping identifies similarity or…

信息检索 · 计算机科学 2025-02-27 Hui Feng , Yuntzu Yin , Emiliano Reynares , Jay Nanavati

Deep neural networks trained for predicting cellular events from DNA sequence have become emerging tools to help elucidate the biological mechanism underlying the associations identified in genome-wide association studies. To enhance the…

机器学习 · 计算机科学 2022-09-27 Mohammad Shiri , Jiangwen Sun

In this paper, we propose a framework that incorporates experts diagnostics and insights into the analysis of Optical Coherence Tomography (OCT) using multi-modal learning. To demonstrate the effectiveness of this approach, we create a…

图像与视频处理 · 电气工程与系统科学 2022-03-22 Y. Logan , K. Kokilepersaud , G. Kwon , G. AlRegib , C. Wykoff , H. Yu

We present a comprehensive system for addressing Tasks A, B, and C of the LLMs4OL 2025 challenge, which together span the full ontology construction pipeline: term extraction, typing, and taxonomy discovery. Our approach combines…

计算与语言 · 计算机科学 2025-08-28 Aleksandra Beliaeva , Temurbek Rahmatullaev

High-dimensional omics data contains intrinsic biomedical information that is crucial for personalised medicine. Nevertheless, it is challenging to capture them from the genome-wide data due to the large number of molecular features and…

基因组学 · 定量生物学 2021-06-22 Xiaoyu Zhang , Yuting Xing , Kai Sun , Yike Guo

Multi-Task Learning (MTL) is a learning paradigm in machine learning and its aim is to leverage useful information contained in multiple related tasks to help improve the generalization performance of all the tasks. In this paper, we give a…

机器学习 · 计算机科学 2021-03-30 Yu Zhang , Qiang Yang

The increasing size of data generated by smartphones and IoT devices motivated the development of Federated Learning (FL), a framework for on-device collaborative training of machine learning models. First efforts in FL focused on learning…

机器学习 · 计算机科学 2022-11-08 Othmane Marfoq , Giovanni Neglia , Aurélien Bellet , Laetitia Kameni , Richard Vidal

One of the main current challenges in Educational Data Mining and Learning Analytics is the portability or transferability of predictive models obtained for a particular course so that they can be applied to other different courses. To…

人工智能 · 计算机科学 2024-10-11 Javier Lopez Zambrano , Juan A. Lara , Cristobal Romero

In the realm of big data and digital healthcare, Electronic Health Records (EHR) have become a rich source of information with the potential to improve patient care and medical research. In recent years, machine learning models have…

机器学习 · 计算机科学 2024-10-10 Suhan Cui , Prasenjit Mitra

To minimize the accelerating amount of time invested in the biomedical literature search, numerous approaches for automated knowledge extraction have been proposed. Relation extraction is one such task where semantic relations between the…

计算与语言 · 计算机科学 2020-09-22 Shweta Yadav , Srivatsa Ramesh , Sriparna Saha , Asif Ekbal

Ontology-based approaches for predicting gene-disease associations include the more classical semantic similarity methods and more recently knowledge graph embeddings. While semantic similarity is typically restricted to hierarchical…

机器学习 · 计算机科学 2021-06-01 Susana Nunes , Rita T. Sousa , Catia Pesquita

The increased availability of electronic health records (EHRs) have spearheaded the initiative for precision medicine using data driven approaches. Essential to this effort is the ability to identify patients with certain medical conditions…

Multi-Task Learning has emerged as a methodology in which multiple tasks are jointly learned by a shared learning algorithm, such as a DNN. MTL is based on the assumption that the tasks under consideration are related; therefore it exploits…

计算机视觉与模式识别 · 计算机科学 2021-05-11 Dimitrios Kollias , Viktoriia Sharmanska , Stefanos Zafeiriou

Multi-task learning (MTL) is a powerful approach in deep learning that leverages the information from multiple tasks during training to improve model performance. In medical imaging, MTL has shown great potential to solve various tasks.…

计算机视觉与模式识别 · 计算机科学 2023-09-08 Sangwook Kim , Thomas G. Purdie , Chris McIntosh

The development of a company often entails the emergence of autonomous data sources with different structural and technological organization. This can lead to the inability of data analysis at a high level and a violation of the integrity…

信息检索 · 计算机科学 2022-01-14 A. Kalinin , E. Shikov , D. Vaganov , A. Lysenko

We propose a new semi-supervised learning method on face-related tasks based on Multi-Task Learning (MTL) and data distillation. The proposed method exploits multiple datasets with different labels for different-but-related tasks such as…

计算机视觉与模式识别 · 计算机科学 2019-07-10 Sepidehsadat Hosseini , Mohammad Amin Shabani , Nam Ik Cho

Learning quickly is of great importance for machine intelligence deployed in online platforms. With the capability of transferring knowledge from learned tasks, meta-learning has shown its effectiveness in online scenarios by continuously…

机器学习 · 计算机科学 2020-10-23 Huaxiu Yao , Yingbo Zhou , Mehrdad Mahdavi , Zhenhui Li , Richard Socher , Caiming Xiong