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Molecular optimization aims to discover novel molecules with desirable properties. Two fundamental challenges are: (i) it is not trivial to generate valid molecules in a controllable way due to hard chemical constraints such as the valency…

机器学习 · 计算机科学 2019-04-24 Hiroshi Kajino

Deep generative models have achieved remarkable success in various data domains, including images, time series, and natural languages. There remain, however, substantial challenges for combinatorial structures, including graphs. One of the…

机器学习 · 计算机科学 2018-09-21 Tengfei Ma , Jie Chen , Cao Xiao

Predicting drop coalescence based on process parameters is crucial for experiment design in chemical engineering. However, predictive models can suffer from the lack of training data and more importantly, the label imbalance problem. In…

计算工程、金融与科学 · 计算机科学 2023-05-02 Kewei Zhu , Sibo Cheng , Nina Kovalchuk , Mark Simmons , Yi-Ke Guo , Omar K. Matar , Rossella Arcucci

Generating novel molecules with optimal properties is a crucial step in many industries such as drug discovery. Recently, deep generative models have shown a promising way of performing de-novo molecular design. Although graph generative…

机器学习 · 计算机科学 2018-11-27 Rim Assouel , Mohamed Ahmed , Marwin H Segler , Amir Saffari , Yoshua Bengio

Deep generative models (DGMs) can generate synthetic data samples that closely resemble the original dataset, addressing data scarcity. In this work, we developed a conditional variational autoencoder (CVAE) to augment critical heat flux…

机器学习 · 计算机科学 2025-02-25 Farah Alsafadi , Aidan Furlong , Xu Wu

Although machine learning has been successfully used to propose novel molecules that satisfy desired properties, it is still challenging to explore a large chemical space efficiently. In this paper, we present a conditional molecular design…

机器学习 · 计算机科学 2019-04-02 Seokho Kang , Kyunghyun Cho

Learning the underlying distribution of molecular graphs and generating high-fidelity samples is a fundamental research problem in drug discovery and material science. However, accurately modeling distribution and rapidly generating novel…

机器学习 · 计算机科学 2023-05-24 Han Huang , Leilei Sun , Bowen Du , Weifeng Lv

Deep generative models such as conditional variational autoencoders (CVAEs) have shown great promise for predicting trajectories of surrounding agents in autonomous vehicle planning. State-of-the-art models have achieved remarkable accuracy…

机器人学 · 计算机科学 2025-10-14 Yongxi Cao , Julian F. Schumann , Jens Kober , Joni Pajarinen , Arkady Zgonnikov

Recent advances in artificial intelligence have propelled the development of innovative computational materials modeling and design techniques. Generative deep learning models have been used for molecular representation, discovery, and…

化学物理 · 物理学 2021-02-12 Navid Shervani-Tabar , Nicholas Zabaras

Autoencoders are effective deep learning models that can function as generative models and learn latent representations for downstream tasks. The use of graph autoencoders - with both encoder and decoder implemented as message passing…

机器学习 · 计算机科学 2025-03-04 Magnus Cunow , Gerrit Großmann

In order to continuously represent molecules, we propose a generative model in the form of a VAE which is operating on the 2D-graph structure of molecules. A side predictor is employed to prune the latent space and help the decoder in…

机器学习 · 计算机科学 2020-04-20 Mohammadamin Tavakoli , Pierre Baldi

Problems such as predicting a new shading field (Y) for an image (X) are ambiguous: many very distinct solutions are good. Representing this ambiguity requires building a conditional model P(Y|X) of the prediction, conditioned on the image.…

计算机视觉与模式识别 · 计算机科学 2017-03-29 Jiajun Lu , Aditya Deshpande , David Forsyth

We introduce the variational graph auto-encoder (VGAE), a framework for unsupervised learning on graph-structured data based on the variational auto-encoder (VAE). This model makes use of latent variables and is capable of learning…

机器学习 · 统计学 2016-11-23 Thomas N. Kipf , Max Welling

Deep generative models are attracting great attention as a new promising approach for molecular design. All models reported so far are based on either variational autoencoder (VAE) or generative adversarial network (GAN). Here we propose a…

化学物理 · 物理学 2019-12-13 Seung Hwan Hong , Jaechang Lim , Seongok Ryu , Woo Youn Kim

Sampling-based motion planning under task constraints is challenging because the null-measure constraint manifold in the configuration space makes rejection sampling extremely inefficient, if not impossible. This paper presents a…

机器人学 · 计算机科学 2022-04-15 Cihan Acar , Keng Peng Tee

In recent years, trace generation has emerged as a significant challenge within the Process Mining community. Deep Learning (DL) models have demonstrated accuracy in reproducing the features of the selected processes. However, current DL…

Prior research has shown variational autoencoders (VAEs) to be useful for generating and blending game levels by learning latent representations of existing level data. We build on such models by exploring the level design affordances and…

机器学习 · 计算机科学 2020-10-16 Anurag Sarkar , Zhihan Yang , Seth Cooper

Conditional variational autoencoders (CVAEs) are versatile deep generative models that extend the standard VAE framework by conditioning the generative model with auxiliary covariates. The original CVAE model assumes that the data samples…

Graph generation techniques are increasingly being adopted for drug discovery. Previous graph generation approaches have utilized relatively small molecular building blocks such as atoms or simple cycles, limiting their effectiveness to…

机器学习 · 计算机科学 2020-04-21 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Deep generative models for graphs have exhibited promising performance in ever-increasing domains such as design of molecules (i.e, graph of atoms) and structure prediction of proteins (i.e., graph of amino acids). Existing work typically…

机器学习 · 计算机科学 2021-01-21 Wenbin Zhang , Liming Zhang , Dieter Pfoser , Liang Zhao