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Over the past years, the ever-growing trend on data storage demand, more specifically for "cold" data (i.e. rarely accessed), has motivated research for alternative systems of data storage. Because of its biochemical characteristics,…

图像与视频处理 · 电气工程与系统科学 2023-05-11 Xavier Pic , Eva Gil San Antonio , Melpomeni Dimopoulou , Marc Antonini

Recently deep neural networks have been successfully used for various classification tasks, especially for problems with massive perfectly labeled training data. However, it is often costly to have large-scale credible labels in real-world…

机器学习 · 计算机科学 2019-01-15 Mingxiao An , Yongzhou Chen , Qi Liu , Chuanren Liu , Guangyi Lv , Fangzhao Wu , Jianhui Ma

We consider the problem of storing and retrieving information from synthetic DNA media. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on their collection of substrings…

信息论 · 计算机科学 2015-02-03 Han Mao Kiah , Gregory J. Puleo , Olgica Milenkovic

As a medium for cold data storage, DNA stands out as it promises significant gains in storage capacity and lifetime. However, it comes with its own data processing challenges to overcome. Constrained codes over the DNA alphabet…

信息论 · 计算机科学 2025-10-08 Canberk İrimağzı , Ahmed Hareedy

Nanopore sequencing, superior to other sequencing technologies for DNA storage in multiple aspects, has recently attracted considerable attention. Its high error rates, however, demand thorough research on practical and efficient coding…

信息论 · 计算机科学 2024-06-21 Anisha Banerjee , Yonatan Yehezkeally , Antonia Wachter-Zeh , Eitan Yaakobi

In the recent years, DNA has emerged as a potentially viable storage technology. DNA synthesis, which refers to the task of writing the data into DNA, is perhaps the most costly part of existing storage systems. Accordingly, this high cost…

信息论 · 计算机科学 2022-04-15 Ohad Elishco , Wasim Huleihel

Quantum error correction plays a critical role in enabling fault-tolerant quantum computing by protecting fragile quantum information from noise. While general-purpose quantum error correction codes are designed to address a wide range of…

量子物理 · 物理学 2025-08-26 Nirupam Basak , Andrew Tanggara , Ankith Mohan , Goutam Paul , Kishor Bharti

Recently, DNA storage has surfaced as a promising alternative for data storage, presenting notable benefits in terms of storage capacity, cost-effectiveness in maintenance, and the capability for parallel replication. Mathematically, the…

信息论 · 计算机科学 2024-01-31 Yi Lu , Yun Ma , Chenghao Li , Xin Zhang , Guangxiang Si

DNA is emerging as an increasingly attractive medium for data storage due to a number of important and unique advantages it offers, most notably the unprecedented durability and density. While the technology is evolving rapidly, the…

新兴技术 · 计算机科学 2022-05-03 Dehui Lin , Yasamin Tabatabaee , Yash Pote , Djordje Jevdjic

In this paper, we study error-correcting codes for the storage of data in synthetic deoxyribonucleic acid (DNA). We investigate a storage model where data is represented by an unordered set of $M$ sequences, each of length $L$. Errors…

信息论 · 计算机科学 2018-05-10 Andreas Lenz , Paul H. Siegel , Antonia Wachter-Zeh , Eitan Yaakobi

DNA storage systems face significant challenges, including insertion, deletion, and substitution (IDS) errors. Therefore, designing effective synchronization codes, i.e., codes capable of correcting IDS errors, is essential for DNA storage…

信息论 · 计算机科学 2025-05-23 Javad Haghighat , Tolga M. Duman

Error-correcting codes over sets, with applications to DNA storage, are studied. The DNA-storage channel receives a set of sequences, and produces a corrupted version of the set, including sequence loss, symbol substitution, symbol…

信息论 · 计算机科学 2021-07-12 Hengjia Wei , Moshe Schwartz

Large pools of synthetic DNA molecules have been recently used to reliably store significant volumes of digital data. While DNA as a storage medium has enormous potential because of its high storage density, its practical use is currently…

数据结构与算法 · 计算机科学 2021-02-25 Konstantin Makarychev , Miklos Z. Racz , Cyrus Rashtchian , Sergey Yekhanin

Label noise in datasets could significantly damage the performance and robustness of deep neural networks (DNNs) trained on these datasets. As the size of modern DNNs grows, there is a growing demand for automated tools for detecting such…

机器学习 · 计算机科学 2025-10-28 Dang Huu-Tien , Minh-Phuong Nguyen , Naoya Inoue

In this paper, we study achievable rates of concatenated coding schemes over a deoxyribonucleic acid (DNA) storage channel. Our channel model incorporates the main features of DNA-based data storage. First, information is stored on many,…

信息论 · 计算机科学 2020-05-04 Andreas Lenz , Lorenz Welter , Sven Puchinger

Due to its longevity and enormous information density, DNA is an attractive medium for archival data storage. Thanks to rapid technological advances, DNA storage is becoming practically feasible, as demonstrated by a number of experimental…

信息论 · 计算机科学 2022-11-11 Ilan Shomorony , Reinhard Heckel

We construct new families of multi-error-correcting quantum codes for the amplitude damping channel. Our key observation is that, with proper encoding, two uses of the amplitude damping channel simulate a quantum erasure channel. This…

量子物理 · 物理学 2011-03-31 Runyao Duan , Markus Grassl , Zhengfeng Ji , Bei Zeng

DNA Data storage has recently attracted much attention due to its durable preservation and extremely high information density (bits per gram) properties. In this work, we propose a hybrid coding strategy comprising of generalized…

信息论 · 计算机科学 2021-12-20 Yixin Wang , Li Deng , Md. Noor-A-Rahim , Erry Gunawan , Yong L. Guan , Zhi P. Shi , Chueh L. Poh

We describe a strategy for constructing codes for DNA-based information storage by serial composition of weighted finite-state transducers. The resulting state machines can integrate correction of substitution errors; synchronization by…

信息论 · 计算机科学 2016-11-18 Ian Holmes

DNA has emerged as a promising alternative for long-term data storage due to its high capacity, durability, and low-energy potential. However, storing data in DNA presents several challenges. First, it requires complex and costly…

其他定量生物学 · 定量生物学 2025-11-20 Sara Al Sayyed , Aline Roumy , Thomas Maugey