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In the modern age of social media and networks, graph representations of real-world phenomena have become an incredibly useful source to mine insights. Often, we are interested in understanding how entities in a graph are interconnected.…

机器学习 · 计算机科学 2021-12-16 Aneesh Komanduri , Justin Zhan

Graph Neural Networks have shown excellent performance on semi-supervised classification tasks. However, they assume access to a graph that may not be often available in practice. In the absence of any graph, constructing k-Nearest Neighbor…

机器学习 · 计算机科学 2021-02-23 Vijay Lingam , Arun Iyer , Rahul Ragesh

Disease-gene prediction (DGP) refers to the computational challenge of predicting associations between genes and diseases. Effective solutions to the DGP problem have the potential to accelerate the therapeutic development pipeline at early…

机器学习 · 计算机科学 2019-07-15 Vikash Singh , Pietro Lio'

Traditional convolutional neural networks are limited to handling Euclidean space data, overlooking the vast realm of real-life scenarios represented as graph data, including transportation networks, social networks, and reference networks.…

机器学习 · 计算机科学 2023-07-04 Xingyu Liu , Juan Chen , Quan Wen

Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts--between individuals or between population centres--are increasingly used for these purposes.…

社会与信息网络 · 计算机科学 2021-09-15 Shenghao Yang , Priyabrata Senapati , Di Wang , Chris T. Bauch , Kimon Fountoulakis

The problem of identifying the source of a propagation based on limited observations has been studied significantly in recent years, as it can help reducing the damage caused by unwanted infections. In this paper we present an efficient…

社会与信息网络 · 计算机科学 2018-08-17 Shabnam Behzad , Arman Sepehr , Hamid Beigy , Mohammadzaman Zamani

Lots of learning tasks require dealing with graph data which contains rich relation information among elements. Modeling physics systems, learning molecular fingerprints, predicting protein interface, and classifying diseases demand a model…

机器学习 · 计算机科学 2021-10-07 Jie Zhou , Ganqu Cui , Shengding Hu , Zhengyan Zhang , Cheng Yang , Zhiyuan Liu , Lifeng Wang , Changcheng Li , Maosong Sun

Understanding disease similarity is critical for advancing diagnostics, drug discovery, and personalized treatment strategies. We present PhenoGnet, a novel graph-based contrastive learning framework designed to predict disease similarity…

基因组学 · 定量生物学 2025-09-18 Ranga Baminiwatte , Kazi Jewel Rana , Aaron J. Masino

In many cases, tainted information in a computer network can spread in a way similar to an epidemics in the human world. On the other had, information processing paths are often redundant, so a single infection occurrence can be easily…

物理与社会 · 物理学 2024-03-07 Franco Bagnoli , Emanuele Bellini , Emanuele Massaro

Community detection is a fundamental problem in machine learning. While deep learning has shown great promise in many graphrelated tasks, developing neural models for community detection has received surprisingly little attention. The few…

机器学习 · 计算机科学 2019-09-27 Oleksandr Shchur , Stephan Günnemann

We study how we can accelerate the spreading of information in temporal graphs via shifting operations; a problem that captures real-world applications varying from information flows to distribution schedules. In a temporal graph there is a…

数据结构与算法 · 计算机科学 2025-10-09 Argyrios Deligkas , Eduard Eiben , George Skretas

In the semi-supervised setting where labeled data are largely limited, it remains to be a big challenge for message passing based graph neural networks (GNNs) to learn feature representations for the nodes with the same class label that is…

机器学习 · 计算机科学 2023-05-09 Acong Zhang , Ping Li , Guanrong Chen

In this paper, we study the spread of a classical SIR process on a two-layer random network, where the first layer represents the households, while the second layer models the contacts outside the households by a random scale-free graph. We…

种群与进化 · 定量生物学 2024-03-01 Ágnes Backhausz , Edit Bognár , Villő Csiszár , Damján Tárkányi , András Zempléni

Graph Neural Networks (GNNs) have demonstrated a great potential in a variety of graph-based applications, such as recommender systems, drug discovery, and object recognition. Nevertheless, resource-efficient GNN learning is a rarely…

机器学习 · 计算机科学 2022-02-18 Zihui Xue , Yuedong Yang , Mengtian Yang , Radu Marculescu

Modeling and generating graphs is fundamental for studying networks in biology, engineering, and social sciences. However, modeling complex distributions over graphs and then efficiently sampling from these distributions is challenging due…

机器学习 · 计算机科学 2018-06-26 Jiaxuan You , Rex Ying , Xiang Ren , William L. Hamilton , Jure Leskovec

Heterogeneous molecular entities and their interactions, commonly depicted as a network, are crucial for advancing our systems-level understanding of biology. With recent advancements in high-throughput data generation and a significant…

定量方法 · 定量生物学 2026-03-18 Kishan KC , Rui Li , Paribesh Regmi , Anne R. Haake

The spatial convolution layer which is widely used in the Graph Neural Networks (GNNs) aggregates the feature vector of each node with the feature vectors of its neighboring nodes. The GNN is not aware of the locations of the nodes in the…

机器学习 · 计算机科学 2019-10-04 Mostafa Rahmani , Ping Li

Edge intelligence has arisen as a promising computing paradigm for supporting miscellaneous smart applications that rely on machine learning techniques. While the community has extensively investigated multi-tier edge deployment for…

分布式、并行与集群计算 · 计算机科学 2022-11-01 Liekang Zeng , Chongyu Yang , Peng Huang , Zhi Zhou , Shuai Yu , Xu Chen

Traditionally, community detection in graphs can be solved using spectral methods or posterior inference under probabilistic graphical models. Focusing on random graph families such as the stochastic block model, recent research has unified…

机器学习 · 统计学 2020-08-11 Zhengdao Chen , Xiang Li , Joan Bruna

Continual learning on graphs tackles the problem of training a graph neural network (GNN) where graph data arrive in a streaming fashion and the model tends to forget knowledge from previous tasks when updating with new data. Traditional…

机器学习 · 计算机科学 2024-01-09 Xiaoxue Han , Zhuo Feng , Yue Ning
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