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Molecular simulation trajectories represent high-dimensional data. Such data can be visualized by methods of dimensionality reduction. Non-linear dimensionality reduction methods are likely to be more efficient than linear ones due to the…

化学物理 · 物理学 2020-08-24 Vojtěch Spiwok , Pavel Kříž

Data visualisation helps understanding data represented by multiple variables, also called features, stored in a large matrix where individuals are stored in lines and variable values in columns. These data structures are frequently called…

人机交互 · 计算机科学 2022-07-25 Haseeb Younis , Paul Trust , Rosane Minghim

Multidimensional scaling is a statistical process that aims to embed high dimensional data into a lower-dimensional space; this process is often used for the purpose of data visualisation. Common multidimensional scaling algorithms tend to…

机器学习 · 计算机科学 2022-02-25 Pierre Lambert , Cyril de Bodt , Michel Verleysen , John Lee

Embedding and visualizing large-scale high-dimensional data in a two-dimensional space is an important problem since such visualization can reveal deep insights out of complex data. Most of the existing embedding approaches, however, run on…

机器学习 · 计算机科学 2017-03-06 Minjeong Kim , Minsuk Choi , Sunwoong Lee , Jian Tang , Haesun Park , Jaegul Choo

A fundamental task in machine learning involves visualizing high-dimensional data sets that arise in high-impact application domains. When considering the context of large imbalanced data, this problem becomes much more challenging. In this…

机器学习 · 计算机科学 2021-09-21 Parisa Hajibabaee , Farhad Pourkamali-Anaraki , Mohammad Amin Hariri-Ardebili

Neighbor Embedding (NE) aims to preserve pairwise similarities between data items and has been shown to yield an effective principle for data visualization. However, even the best existing NE methods such as Stochastic Neighbor Embedding…

机器学习 · 计算机科学 2021-09-15 Zhirong Yang , Yuwei Chen , Denis Sedov , Samuel Kaski , Jukka Corander

Stochastic neighbor embedding (SNE) methods $t$-SNE, UMAP are two most popular dimensionality reduction methods for data visualization. Contrastive learning, especially self-supervised contrastive learning (SSCL), has showed great success…

机器学习 · 计算机科学 2023-09-18 Yi Zhang

Stochastic Neighbor Embedding (SNE) is a manifold learning and dimensionality reduction method with a probabilistic approach. In SNE, every point is consider to be the neighbor of all other points with some probability and this probability…

机器学习 · 统计学 2022-08-04 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

This paper presents a kernelized version of the t-SNE algorithm, capable of mapping high-dimensional data to a low-dimensional space while preserving the pairwise distances between the data points in a non-Euclidean metric. This can be…

机器学习 · 计算机科学 2023-11-22 Denis C. Ilie-Ablachim , Bogdan Dumitrescu , Cristian Rusu

t-distributed stochastic neighbor embedding (t-SNE) is a well-established visualization method for complex high-dimensional data. However, the original t-SNE method is nonparametric, stochastic, and often cannot well prevserve the global…

计算机视觉与模式识别 · 计算机科学 2022-01-14 Zixia Zhou , Yuanyuan Wang , Boudewijn P. F. Lelieveldt , Qian Tao

The optimization of electric machines at multiple operating points is crucial for applications that require frequent changes on speeds and loads, such as the electric vehicles, to strive for the machine optimal performance across the entire…

机器学习 · 计算机科学 2019-11-05 Shen Zhang , Shibo Zhang , Sufei Li , Liang Du , Thomas G. Habetler

T-distributed stochastic neighbor embedding (tSNE) is a popular and prize-winning approach for dimensionality reduction and visualizing high-dimensional data. However, tSNE is non-parametric: once visualization is built, tSNE is not…

人工智能 · 计算机科学 2017-08-17 Andrey Boytsov , Francois Fouquet , Thomas Hartmann , Yves LeTraon

T-distributed stochastic neighbor embedding (t-SNE) is a well-known algorithm for visualizing high-dimensional data by finding low-dimensional representations. In this paper, we study the convergence of t-SNE with generalized kernels and…

机器学习 · 统计学 2025-06-10 Yi Gu

This article presents a novel application of the t-distributed Stochastic Neighbor Embedding (t-SNE) clustering algorithm to the telecommunication field. t-SNE is a dimensionality reduction (DR) algorithm that allows the visualization of…

信号处理 · 电气工程与系统科学 2023-04-28 Alejandro Ramírez-Arroyo , Luz García , Antonio Alex-Amor , Juan F. Valenzuela-Valdés

Stochastic Neighbor Embedding (SNE) algorithms like UMAP and tSNE often produce visualizations that do not preserve the geometry of noisy and high dimensional data. In particular, they can spuriously separate connected components of the…

机器学习 · 计算机科学 2025-09-05 Tristan Luca Saidi , Abigail Hickok , Bastian Rieck , Andrew J. Blumberg

Stochastic Neighbor Embedding (SNE) methods minimize the divergence between the similarity matrix of a high-dimensional data set and its counterpart from a low-dimensional embedding, leading to widely applied tools for data visualization.…

机器学习 · 计算机科学 2018-09-13 Yao Lu , Jukka Corander , Zhirong Yang

Non-linear dimensionality reduction (NLDR) methods such as t-distributed stochastic neighbour embedding (t-SNE) are ubiquitous in the natural sciences, however, the appropriate use of these methods is difficult because of their complex…

其他统计学 · 统计学 2020-12-14 Stuart Lee , Ursula Laa , Dianne Cook

The t-distributed stochastic neighbor embedding (t- SNE) is a method for interpreting high dimensional (HD) data by mapping each point to a low dimensional (LD) space (usually two-dimensional). It seeks to retain the structure of the data.…

机器学习 · 计算机科学 2022-11-18 Prakash Chourasia , Sarwan Ali , Murray Patterson

We introduce a nonlinear method for directly embedding large, sparse, stochastic graphs into low-dimensional spaces, without requiring vertex features to reside in, or be transformed into, a metric space. Graph data and models are prevalent…

机器学习 · 计算机科学 2019-06-14 Nikos Pitsianis , Alexandros-Stavros Iliopoulos , Dimitris Floros , Xiaobai Sun

We present a new method GTSNE to visualize high-dimensional data points in the two dimensional map. The technique is a variation of t-SNE that produces better visualizations by capturing both the local neighborhood structure and the macro…

机器学习 · 计算机科学 2021-08-04 Songting Shi