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We define a new problem in comparative genomics, denoted PQ-Tree Search, that takes as input a PQ-tree $T$ representing the known gene orders of a gene cluster of interest, a gene-to-gene substitution scoring function $h$, integer…

基因组学 · 定量生物学 2020-07-08 G. R. Zimerman , D. Svetlitsky , M. Zehavi , M. Ziv-Ukelson

C++ code snippets from a multi-core parallel memory-efficient crossover for genetic programming are given. They may be adapted for separate generation evolutionary algorithms where large chromosomes or small RAM require no more than M + (2…

神经与进化计算 · 计算机科学 2026-05-07 W. B. Langdon

The Zoetrope Genetic Programming (ZGP) algorithm is based on an original representation for mathematical expressions, targeting evolutionary symbolic regression.The zoetropic representation uses repeated fusion operations between partial…

Many applications in machine learning require optimizing a function whose true gradient is unknown, but where surrogate gradient information (directions that may be correlated with, but not necessarily identical to, the true gradient) is…

神经与进化计算 · 计算机科学 2019-06-12 Niru Maheswaranathan , Luke Metz , George Tucker , Dami Choi , Jascha Sohl-Dickstein

Code generation aims to automatically generate code snippets of specific programming language according to natural language descriptions. The continuous advancements in deep learning, particularly pre-trained models, have empowered the code…

软件工程 · 计算机科学 2025-01-24 Zezhou Yang , Sirong Chen , Cuiyun Gao , Zhenhao Li , Xing Hu , Kui Liu , Xin Xia

Motivation: Recent advances in high-throughput sequencing (HTS) have made it possible to monitor genomes in great detail. New experiments not only use HTS to measure genomic features at one time point but to monitor them changing over time…

种群与进化 · 定量生物学 2014-09-19 Hande Topa , Ágnes Jónás , Robert Kofler , Carolin Kosiol , Antti Honkela

In this paper, we propose an interactive genetic algorithm for solving multi-objective combinatorial optimization problems under preference imprecision. More precisely, we consider problems where the decision maker's preferences over…

人工智能 · 计算机科学 2023-11-13 Nawal Benabbou , Cassandre Leroy , Thibaut Lust

Generative retrieval (GR) has emerged as a promising paradigm in information retrieval (IR). However, most existing GR models are developed and evaluated using a static document collection, and their performance in dynamic corpora where…

信息检索 · 计算机科学 2025-04-25 Zhen Zhang , Xinyu Ma , Weiwei Sun , Pengjie Ren , Zhumin Chen , Shuaiqiang Wang , Dawei Yin , Maarten de Rijke , Zhaochun Ren

Code search is to search reusable code snippets from source code corpus based on natural languages queries. Deep learning-based methods of code search have shown promising results. However, previous methods focus on retrieval accuracy but…

软件工程 · 计算机科学 2022-04-01 Wenchao Gu , Yanlin Wang , Lun Du , Hongyu Zhang , Shi Han , Dongmei Zhang , Michael R. Lyu

Genetic Algorithms (GAs) are a powerful technique to address hard optimisation problems. However, scalability issues might prevent them from being applied to real-world problems. Exploiting parallel GAs in the cloud might be an affordable…

神经与进化计算 · 计算机科学 2016-06-23 Pasquale Salza , Filomena Ferrucci

Recursive query processing has experienced a recent resurgence, as a result of its use in many modern application domains, including data integration, graph analytics, security, program analysis, networking and decision making. Due to the…

数据库 · 计算机科学 2018-12-11 Zhiwei Fan , Jianqiao Zhu , Zuyu Zhang , Aws Albarghouthi , Paraschos Koutris , Jignesh Patel

Traditionally Genetic Algorithm has been used for optimization of unimodal and multimodal functions. Earlier researchers worked with constant probabilities of GA control operators like crossover, mutation etc. for tuning the optimization in…

神经与进化计算 · 计算机科学 2021-04-20 Avijit Basak

Evolutionary algorithms (EAs), simulating the evolution process of natural species, are used to solve optimization problems. Crossover (also called recombination), originated from simulating the chromosome exchange phenomena in zoogamy…

神经与进化计算 · 计算机科学 2012-06-06 Yang Yu , Chao Qian , Zhi-Hua Zhou

An efficient team is essential for the company to successfully complete new projects. To solve the team formation problem considering person-job matching (TFP-PJM), a 0-1 integer programming model is constructed, which considers both…

神经与进化计算 · 计算机科学 2023-04-11 Yangyang Guo , Hao Wang , Lei He , Witold Pedrycz , P. N. Suganthan , Yanjie Song

This paper introduces a search algorithm for index structures based on a B+ tree, specifically optimized for execution on a field-programmable gate array (FPGA). Our implementation efficiently traverses and reuses tree nodes by processing a…

硬件体系结构 · 计算机科学 2026-04-24 Max Tzschoppe , Martin Wilhelm , Sven Groppe , Thilo Pionteck

Neural network models of real-world systems, such as industrial processes, made from sensor data must often rely on incomplete data. System states may not all be known, sensor data may be biased or noisy, and it is not often known which…

神经与进化计算 · 计算机科学 2007-06-08 Donald A. Sofge , David L. Elliott

Retrieval-augmented generation (RAG) systems have advanced large language models (LLMs) in complex deep search scenarios requiring multi-step reasoning and iterative information retrieval. However, existing approaches face critical…

In this paper, we introduce, MultiGA, an optimization framework which applies genetic algorithm principles to address complex natural language tasks and reasoning problems by sampling from a diverse population of LLMs to initialize the…

神经与进化计算 · 计算机科学 2026-04-03 Isabelle Diana May-Xin Ng , Tharindu Cyril Weerasooriya , Haitao Zhu , Wei Wei

This paper presents a genetic algorithm (GA) approach to cost-optimal task scheduling in a production line. The system consists of a set of serial processing tasks, each with a given duration, unit execution cost, and precedence…

神经与进化计算 · 计算机科学 2026-01-05 Alireza Rezaee

A random-key genetic algorithm is an evolutionary metaheuristic for discrete and global optimization. Each solution is encoded as a vector of N random keys, where a random key is a real number randomly generated in the continuous interval…

神经与进化计算 · 计算机科学 2026-01-13 Mariana A. Londe , Luciana S. Pessoa , Carlos E. Andrade , José F. Gonçalves , Mauricio G. C. Resende