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Structural information about protein-protein interactions, often missing at the interactome scale, is important for mechanistic understanding of cells and rational discovery of therapeutics. Protein docking provides a computational…

生物大分子 · 定量生物学 2020-12-17 Yue Cao , Yang Shen

Predicting the biological function of molecules, be it proteins or drug-like compounds, from their atomic structure is an important and long-standing problem. Function is dictated by structure, since it is by spatial interactions that…

Background and Aim: Accurate classification of Magnetic Resonance Images (MRI) is essential to accurately predict Mild Cognitive Impairment (MCI) to Alzheimer's Disease (AD) conversion. Meanwhile, deep learning has been successfully…

计算机视觉与模式识别 · 计算机科学 2021-09-03 Kshitiz Shrestha , Omar Hisham Alsadoon , Abeer Alsadoon , Tarik A. Rashid , Rasha S. Ali , P. W. C. Prasad , Oday D. Jerew

Recent advancements in graph neural networks (GNNs) have significantly enhanced the prediction of material properties by modeling crystal structures as graphs. However, GNNs often struggle to capture global structural characteristics, such…

机器学习 · 计算机科学 2025-08-11 Jaewan Lee , Changyoung Park , Hongjun Yang , Sungbin Lim , Woohyung Lim , Sehui Han

This study proposes an efficient neural network with convolutional layers to classify significantly class-imbalanced clinical data. The data are curated from the National Health and Nutritional Examination Survey (NHANES) with the goal of…

定量方法 · 定量生物学 2020-04-24 Aniruddha Dutta , Tamal Batabyal , Meheli Basu , Scott T. Acton

In this paper, we propose to use deep 3-dimensional convolutional networks (3D CNNs) in order to address the challenge of modelling spectro-temporal dynamics for speech emotion recognition (SER). Compared to a hybrid of Convolutional Neural…

计算与语言 · 计算机科学 2017-08-18 Jaebok Kim , Khiet P. Truong , Gwenn Englebienne , Vanessa Evers

3D Convolutional Neural Networks (3D-CNN) have been used for object recognition based on the voxelized shape of an object. However, interpreting the decision making process of these 3D-CNNs is still an infeasible task. In this paper, we…

机器学习 · 统计学 2018-03-29 Sambit Ghadai , Aditya Balu , Adarsh Krishnamurthy , Soumik Sarkar

Nanoscale L12-type ordered structures are widely used in face-centred cubic (FCC) alloys to exploit their hardening capacity and thereby improve mechanical properties. These fine-scale particles are typically fully coherent with matrix with…

Traffic prediction is a critical component of intelligent transportation systems, enabling applications such as congestion mitigation and accident risk prediction. While recent research has explored both graph-based and grid-based…

计算机视觉与模式识别 · 计算机科学 2025-09-22 Hyeonseok Jin , Geonmin Kim , Kyungbaek Kim

The adaptability of the convolutional neural network (CNN) technique for aerodynamic meta-modeling tasks is probed in this work. The primary objective is to develop suitable CNN architecture for variable flow conditions and object geometry,…

机器学习 · 统计学 2018-01-18 Yao Zhang , Woong-Je Sung , Dimitri Mavris

Convolutional neural networks (CNNs) for image processing tend to focus on localized texture patterns, commonly referred to as texture bias. While most of the previous works in the literature focus on the task of image classification, we go…

计算机视觉与模式识别 · 计算机科学 2024-07-23 Edgar Heinert , Matthias Rottmann , Kira Maag , Karsten Kahl

The affinity and specificity of protein-molecule binding directly impact functional outcomes, uncovering the mechanisms underlying biological regulation and signal transduction. Most deep-learning-based prediction approaches focus on…

机器学习 · 计算机科学 2025-06-03 Haitao Lin , Odin Zhang , Jia Xu , Yunfan Liu , Zheng Cheng , Lirong Wu , Yufei Huang , Zhifeng Gao , Stan Z. Li

Equivariant neural networks (ENNs) are graph neural networks embedded in $\mathbb{R}^3$ and are well suited for predicting molecular properties. The ENN library e3nn has customizable convolutions, which can be designed to depend only on…

机器学习 · 计算机科学 2020-11-25 Benjamin Kurt Miller , Mario Geiger , Tess E. Smidt , Frank Noé

Background Precise prediction of cancer types is vital for cancer diagnosis and therapy. Important cancer marker genes can be inferred through predictive model. Several studies have attempted to build machine learning models for this task…

基因组学 · 定量生物学 2019-06-20 Milad Mostavi , Yu-Chiao Chiu , Yufei Huang , Yidong Chen

Classification of EEG signals using shallow Convolutional Neural Networks (CNNs) is a prevalent and successful approach across a variety of fields. Most of these models use independent one-dimensional (1D) convolutional layers along the…

机器学习 · 计算机科学 2026-05-06 Laurits Dixen , Stefan Heinrich , Paolo Burelli

Building discriminative representations for 3D data has been an important task in computer graphics and computer vision research. Convolutional Neural Networks (CNNs) have shown to operate on 2D images with great success for a variety of…

计算机视觉与模式识别 · 计算机科学 2016-10-26 Yangyan Li , Soeren Pirk , Hao Su , Charles R. Qi , Leonidas J. Guibas

In the past few years, convolutional neural nets (CNN) have shown incredible promise for learning visual representations. In this paper, we use CNNs for the task of predicting surface normals from a single image. But what is the right…

计算机视觉与模式识别 · 计算机科学 2014-11-19 Xiaolong Wang , David F. Fouhey , Abhinav Gupta

There has been a recent surge of interest in using machine learning to approximate density functional theory (DFT) in materials science. However, many of the most performant models are evaluated on large databases of computed properties of,…

材料科学 · 物理学 2021-07-02 Filip Ekström , Rickard Armiento , Fredrik Lindsten

The prediction of configurational disorder properties, such as configurational entropy and order-disorder phase transition temperature, of compound materials relies on efficient and accurate evaluations of configurational energies. Previous…

材料科学 · 物理学 2024-01-31 Zhenyao Fang , Qimin Yan

Deep Convolutional Neural Network (CNN) is a special type of Neural Networks, which has shown exemplary performance on several competitions related to Computer Vision and Image Processing. Some of the exciting application areas of CNN…

计算机视觉与模式识别 · 计算机科学 2020-05-12 Asifullah Khan , Anabia Sohail , Umme Zahoora , Aqsa Saeed Qureshi