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We present an end-to-end, interpretable, deep-learning architecture to learn a graph kernel that predicts the outcome of chronic disease drug prescription. This is achieved through a deep metric learning collaborative with a Support Vector…

机器学习 · 计算机科学 2020-08-06 Hao-Ren Yao , Der-Chen Chang , Ophir Frieder , Wendy Huang , I-Chia Liang , Chi-Feng Hung

We tackle classification based on brain connectivity derived from diffusion magnetic resonance images. We propose a machine-learning model inspired by graph convolutional networks (GCNs), which takes a brain connectivity input graph and…

神经元与认知 · 定量生物学 2023-09-21 Anees Kazi , Jocelyn Mora , Bruce Fischl , Adrian V. Dalca , Iman Aganj

Recent studies on Graph Convolutional Networks (GCNs) reveal that the initial node representations (i.e., the node representations before the first-time graph convolution) largely affect the final model performance. However, when learning…

机器学习 · 计算机科学 2022-03-10 Weijian Chen , Fuli Feng , Qifan Wang , Xiangnan He , Chonggang Song , Guohui Ling , Yongdong Zhang

Predicting drug side-effects before they occur is a key task in keeping the number of drug-related hospitalizations low and to improve drug discovery processes. Automatic predictors of side-effects generally are not able to process the…

机器学习 · 统计学 2022-12-01 Pietro Bongini , Elisa Messori , Niccolò Pancino , Monica Bianchini

Traditional Chinese Medicine (TCM) represents a rich repository of ancient medical knowledge that continues to play an important role in modern healthcare. Due to the complexity and breadth of the TCM literature, the integration of AI…

信息检索 · 计算机科学 2025-06-30 Jinglin He , Yunqi Guo , Lai Kwan Lam , Waikei Leung , Lixing He , Yuanan Jiang , Chi Chiu Wang , Guoliang Xing , Hongkai Chen

We propose a Reinforcement Learning based approach to approximately solve the Tree Decomposition (TD) problem. TD is a combinatorial problem, which is central to the analysis of graph minor structure and computational complexity, as well as…

机器学习 · 计算机科学 2020-12-08 Taras Khakhulin , Roman Schutski , Ivan Oseledets

Text classification aims to assign labels to textual units by making use of global information. Recent studies have applied graph neural network (GNN) to capture the global word co-occurrence in a corpus. Existing approaches require that…

计算与语言 · 计算机科学 2022-06-02 Kunze Wang , Soyeon Caren Han , Josiah Poon

Recently, Graph Convolution Network (GCN) based methods have achieved outstanding performance for recommendation. These methods embed users and items in Euclidean space, and perform graph convolution on user-item interaction graphs.…

信息检索 · 计算机科学 2021-08-11 Liping Wang , Fenyu Hu , Shu Wu , Liang Wang

Factorization machine (FM) is an effective model for feature-based recommendation which utilizes inner product to capture second-order feature interactions. However, one of the major drawbacks of FM is that it couldn't capture complex…

机器学习 · 计算机科学 2024-04-03 Enneng Yang , Xin Xin , Li Shen , Guibing Guo

Enriching existing medical terminology knowledge bases (KBs) is an important and never-ending work for clinical research because new terminology alias may be continually added and standard terminologies may be newly renamed. In this paper,…

计算与语言 · 计算机科学 2019-09-04 Jiaying Zhang , Zhixing Zhang , Huanhuan Zhang , Zhiyuan Ma , Yangming Zhou , Ping He

Recent advancements in deep neural networks for graph-structured data have led to state-of-the-art performance on recommender system benchmarks. In this work, we present a Graph Convolutional Network (GCN) algorithm SWAG (Sample Weight and…

信息检索 · 计算机科学 2020-08-24 Amit Pande , Kai Ni , Venkataramani Kini

This paper studies causal inference with observational data from a single large network. We consider a nonparametric model with interference in both potential outcomes and selection into treatment. Specifically, both stages may be the…

计量经济学 · 经济学 2025-12-30 Michael P. Leung , Pantelis Loupos

In recent years, inductive graph embedding models, \emph{viz.}, graph neural networks (GNNs) have become increasingly accurate at link prediction (LP) in online social networks. The performance of such networks depends strongly on the input…

机器学习 · 计算机科学 2021-08-24 Chitrank Gupta , Yash Jain , Abir De , Soumen Chakrabarti

Discovering distinct features and their relations from data can help us uncover valuable knowledge crucial for various tasks, e.g., classification. In neuroimaging, these features could help to understand, classify, and possibly prevent…

机器学习 · 计算机科学 2022-02-15 Usman Mahmood , Zening Fu , Vince Calhoun , Sergey Plis

Drug repurposing is more relevant than ever due to drug development's rising costs and the need to respond to emerging diseases quickly. Knowledge graph embedding enables drug repurposing using heterogeneous data sources combined with…

Designing a new clinical trial entails many decisions, such as defining a cohort and setting the study objectives to name a few, and therefore can benefit from recommendations based on exhaustive mining of past clinical trial records. Here,…

人工智能 · 计算机科学 2023-09-29 Murthy V. Devarakonda , Smita Mohanty , Raja Rao Sunkishala , Nag Mallampalli , Xiong Liu

Graph convolutional network (GCN) based approaches have achieved significant progress for solving complex, graph-structured problems. GCNs incorporate the graph structure information and the node (or edge) features through message passing…

机器学习 · 计算机科学 2021-05-04 Saurav Manchanda , Da Zheng , George Karypis

Knowledge Graphs have been one of the fundamental methods for integrating heterogeneous data sources. Integrating heterogeneous data sources is crucial, especially in the biomedical domain, where central data-driven tasks such as drug…

机器学习 · 计算机科学 2020-12-22 Islam Akef Ebeid , Majdi Hassan , Tingyi Wanyan , Jack Roper , Abhik Seal , Ying Ding

The rich diversity of herbal plants in Indonesia holds immense potential as alternative resources for traditional healing and ethnobotanical practices. However, the dwindling recognition of herbal plants due to modernization poses a…

计算机视觉与模式识别 · 计算机科学 2024-06-11 Muhammad Salman Ikrar Musyaffa , Novanto Yudistira , Muhammad Arif Rahman , Jati Batoro

Graph representation learning aims to effectively encode high-dimensional sparse graph-structured data into low-dimensional dense vectors, which is a fundamental task that has been widely studied in a range of fields, including machine…