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The swimming properties of an E. coli-type model bacterium are investigated by mesoscale hy- drodynamic simulations, combining molecular dynamics simulations of the bacterium with the multiparticle particle collision dynamics method for the…

软凝聚态物质 · 物理学 2016-08-23 Jinglei Hu , Mingcheng Yang , Gerhard Gompper , Roland G. Winkler

Near-field hydrodynamic interactions between bacteria and no-slip solid surfaces are the main mechanism underlying surface entrapment of bacteria. In this study, we employ a chiral two-body model to simulate bacterial dynamics near the…

软凝聚态物质 · 物理学 2026-02-25 Baopi Liu , Lu Chen , Haiqin Wang

The hydrodynamic interactions among bacterial cell bodies, flagella, and surrounding boundaries are essential for understanding bacterial motility in complex environments. In this study, we demonstrate that each slender flagellum can be…

软凝聚态物质 · 物理学 2025-01-07 Baopi Liu , Lu Chen , Ji Zhang

The internal dynamics of active gels, both in artificial (in-vitro) model systems and inside the cytoskeleton of living cells, has been extensively studied by experiments of recent years. These dynamics are probed using tracer particles…

软凝聚态物质 · 物理学 2015-07-28 E. Ben Isaac , É. Fodor , P. Visco , F. van Wijland , N. S. Gov

The near-surface swimming patterns of bacteria are strongly determined by the hydrodynamic interactions between bacteria and the surface, which trap bacteria in smooth circular trajectories that lead to inefficient surface exploration.…

Active matter exhibits various forms of non-equilibrium states in the absence of external forcing, including macroscopic steady-state currents. Such states are often too complex to be modelled from first principles and our understanding of…

软凝聚态物质 · 物理学 2020-09-17 Viktor Škultéty , Cesare Nardini , Joakim Stenhammar , Davide Marenduzzo , Alexander Morozov

A simple model for simulating flows of active suspensions is investigated. The approach is based on dissipative particle dynamics. While the model is potentially applicable to a wide range of self-propelled particle systems, the specific…

流体动力学 · 物理学 2015-10-08 Denis F. Hinz , Alexander Panchenko , Tae-Yeon Kim , Eliot Fried

Cells swimming in confined environments are attracted by surfaces. We measure the steady-state distribution of smooth-swimming bacteria (Escherichia coli) between two glass plates. In agreement with earlier studies, we find a strong…

软凝聚态物质 · 物理学 2008-10-02 Allison P. Berke , Linda Turner , Howard C. Berg , Eric Lauga

The field of active matter explores the behaviors of self propelled agents out of equilibrium, with active suspensions, such as swimming bacteria in solutions, serving as impactful models. These systems exhibit spatio-temporal patterns akin…

软凝聚态物质 · 物理学 2025-08-26 Pratikshya Jena , Shradha Mishra

The entrapment of bacteria near boundary surfaces is of biological and practical importance, yet the underlying physics is still not well understood. We demonstrate that it is crucial to include a commonly neglected entropic effect arising…

软凝聚态物质 · 物理学 2023-07-28 Premkumar Leishangthem , Xinliang Xu

The dynamics and the steady states of a point-like tracer particle immersed in a confined critical fluid are studied. The fluid is modeled field-theoretically in terms of an order parameter (concentration or density field) obeying…

统计力学 · 物理学 2023-01-03 Markus Gross

Microswimmers such as E. Coli bacteria accumulate and exhibit an intriguing dynamics near walls, governed by hydrodynamic and steric interactions. Insight into the underlying mechanisms and predominant interactions demand a detailed…

软凝聚态物质 · 物理学 2020-07-03 S. Mahdiyeh Mousavi , Gerhard Gompper , Roland G. Winkler

Drying of bacterial suspensions is frequently encountered in a plethora of natural and engineering processes. However, the evaporation-driven mechanical instabilities of dense consolidating bacterial suspensions have not been explored…

软凝聚态物质 · 物理学 2022-07-26 Xiaolei Ma , Zhengyang Liu , Wei Zeng , Tianyi Lin , Xin Tian , Xiang Cheng

We present a simple model for bacteria like \emph{Escherichia coli} swimming near solid surfaces. It consists of two spheres of different radii connected by a dragless rod. The effect of the flagella is taken into account by imposing a…

流体动力学 · 物理学 2015-06-03 Jocelyn Dunstan , Gastón Miño , Eric Clement , Rodrigo Soto

Self-sustained turbulent structures have been observed in a wide range of living fluids, yet no quantitative theory exists to explain their properties. We report experiments on active turbulence in highly concentrated 3D suspensions of…

We analyze the dynamics of a tracer particle embedded in a bath of hard spheres confined in a channel of varying section. By means of Brownian dynamics simulations we apply a constant force on the tracer particle and discuss the dependence…

软凝聚态物质 · 物理学 2018-11-14 Antonio M. Puertas , Paolo Malgaretti , Ignacio Pagonabarraga

The dynamic interactions between pairs of swimming microorganisms underpin the collective behaviour of larger suspensions, but accurately calculating pairwise collisions has typically required the use of numerical simulations in which…

软凝聚态物质 · 物理学 2021-11-30 C. Darveniza , T. Ishikawa , T. J. Pedley , D. R. Brumley

We point out unconventional mechanical properties of confined active fluids, such as bacterial suspensions, under shear. Using a minimal model of an active liquid crystal with no free parameters, we predict the existence of a window of…

软凝聚态物质 · 物理学 2019-10-08 Aurore Loisy , Jens Eggers , Tanniemola B. Liverpool

Interactions between swimming bacteria have led to remarkable experimentally observable macroscopic properties such as the reduction of the effective viscosity, enhanced mixing, and diffusion. In this work, we study an individual based…

偏微分方程分析 · 数学 2015-04-14 Mykhailo Potomkin , Shawn Ryan , Leonid Berlyand

Near a solid boundary, E. coli swims in clockwise circular motion. We provide a hydrodynamic model for this behavior. We show that circular trajectories are natural consequences of force-free and torque-free swimming, and the hydrodynamic…

软凝聚态物质 · 物理学 2016-08-31 Eric Lauga , Willow R. DiLuzio , George M. Whitesides , Howard A. Stone
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