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Neural networks are becoming increasingly prevalent in software, and it is therefore important to be able to verify their behavior. Because verifying the correctness of neural networks is extremely challenging, it is common to focus on the…

机器学习 · 计算机科学 2019-02-19 Ravi Mangal , Aditya V. Nori , Alessandro Orso

Connectivity robustness, a crucial aspect for understanding, optimizing, and repairing complex networks, has traditionally been evaluated through time-consuming and often impractical simulations. Fortunately, machine learning provides a new…

计算机视觉与模式识别 · 计算机科学 2024-05-30 Wenjun Jiang , Tianlong Fan , Changhao Li , Chuanfu Zhang , Tao Zhang , Zong-fu Luo

The accurate prediction of biological features from genomic data is paramount for precision medicine and sustainable agriculture. For decades, neural network models have been widely popular in fields like computer vision, astrophysics and…

基因组学 · 定量生物学 2022-03-15 Zhaoyi Zhang , Songyang Cheng , Claudia Solis-Lemus

When a biological system robustly corrects component-level errors, the direct pressure on component performance declines. Components may become less reliable, maintain more genetic variability, or drift neutrally in design, creating the…

种群与进化 · 定量生物学 2023-12-27 Steven A. Frank

Concomitant with the evolution of biological diversity must have been the evolution of mechanisms that facilitate evolution, due to the essentially infinite complexity of protein sequence space. We describe how evolvability can be an object…

种群与进化 · 定量生物学 2009-11-10 David J. Earl , Michael W. Deem

Evolving biomolecular networks have to combine the stability against perturbations with flexibility allowing their constituents to assume new roles in the cell. Gene duplication followed by functional divergence of associated proteins is a…

分子网络 · 定量生物学 2007-05-23 Sergei Maslov , Kim Sneppen , Kasper Astrup Eriksen

The validation and verification of artificial intelligence (AI) models through robustness assessment are essential to guarantee the reliable performance of intelligent systems facing real-world challenges, such as image corruptions…

Neural networks trained on visual data are well-known to be vulnerable to often imperceptible adversarial perturbations. The reasons for this vulnerability are still being debated in the literature. Recently Ilyas et al. (2019) showed that…

机器学习 · 计算机科学 2021-02-11 Jacob M. Springer , Melanie Mitchell , Garrett T. Kenyon

Complex evolving systems such as the biosphere, ecosystems and societies exhibit sudden collapses, for reasons that are only partially understood. Here we study this phenomenon using a mathematical model of a system that evolves under…

适应与自组织系统 · 物理学 2007-05-23 Ravi Mehrotra , Vikram Soni , Sanjay Jain

A convolutional neural network strongly robust to adversarial perturbations at reasonable computational and performance cost has not yet been demonstrated. The primate visual ventral stream seems to be robust to small perturbations in…

机器学习 · 计算机科学 2020-07-01 Manish V. Reddy , Andrzej Banburski , Nishka Pant , Tomaso Poggio

We present a model that considers the maturation of the antibody population following primary antigen presentation as a global optimization problem. The trade-off that emerges from our model describes the balance between the safety of…

定量方法 · 定量生物学 2007-05-23 Patricia Theodosopoulos , Ted Theodosopoulos

Now that Bayesian Networks (BNs) have become widely used, an appreciation is developing of just how critical an awareness of the sensitivity and robustness of certain target variables are to changes in the model. When time resources are…

统计方法学 · 统计学 2018-11-20 Sophia K. Wright , Jim Q. Smith

The adversarial robustness of a neural network mainly relies on two factors: model capacity and anti-perturbation ability. In this paper, we study the anti-perturbation ability of the network from the feature maps of convolutional layers.…

计算机视觉与模式识别 · 计算机科学 2024-01-30 Cong Xu , Wei Zhang , Jun Wang , Min Yang

Diverse biological networks exhibit universal features distinguished from those of random networks, calling much attention to their origins and implications. Here we propose a minimal evolution model of Boolean regulatory networks, which…

分子网络 · 定量生物学 2014-11-26 Deok-Sun Lee

Shift invariance is a critical property of CNNs that improves performance on classification. However, we show that invariance to circular shifts can also lead to greater sensitivity to adversarial attacks. We first characterize the margin…

机器学习 · 计算机科学 2021-11-23 Songwei Ge , Vasu Singla , Ronen Basri , David Jacobs

Deep convolutional neural networks (DCNNs) have revolutionized computer vision and are often advocated as good models of the human visual system. However, there are currently many shortcomings of DCNNs, which preclude them as a model of…

计算机视觉与模式识别 · 计算机科学 2022-05-19 Harshitha Machiraju , Oh-Hyeon Choung , Michael H. Herzog , Pascal Frossard

To evaluate the robustness gain of Bayesian neural networks on image classification tasks, we perform input perturbations, and adversarial attacks to the state-of-the-art Bayesian neural networks, with a benchmark CNN model as reference.…

机器学习 · 计算机科学 2021-06-18 Yutian Pang , Sheng Cheng , Jueming Hu , Yongming Liu

The interaction between natural selection and random mutation is frequently debated in recent years. Does similar dilemma also exist in the evolution of real networks such as biological networks? In this paper, we try to discuss this issue…

统计力学 · 物理学 2009-01-07 Zhen Shao , Hai-jun Zhou

The performance of a Convolutional Neural Network (CNN) depends on its hyperparameters, like the number of layers, kernel sizes, or the learning rate for example. Especially in smaller networks and applications with limited computational…

计算机视觉与模式识别 · 计算机科学 2019-05-07 Lukas Hahn , Lutz Roese-Koerner , Klaus Friedrichs , Anton Kummert

Genetic regulation is a key component in development, but a clear understanding of the structure and dynamics of genetic networks is not yet at hand. In this work we investigate these properties within an artificial genome model originally…

分子网络 · 定量生物学 2008-05-01 Thimo Rohlf , Chris Winkler