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Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

信息检索 · 计算机科学 2024-02-07 Martin Lentschat , Cyril Labbé , Ran Cheng

Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

计算与语言 · 计算机科学 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Named entity recognition (NER) is a fundamental part of extracting information from documents in biomedical applications. A notable advantage of NER is its consistency in extracting biomedical entities in a document context. Although…

计算与语言 · 计算机科学 2022-10-25 Minbyul Jeong , Jaewoo Kang

Named-entity recognition (NER) aims at identifying entities of interest in a text. Artificial neural networks (ANNs) have recently been shown to outperform existing NER systems. However, ANNs remain challenging to use for non-expert users.…

计算与语言 · 计算机科学 2017-05-17 Franck Dernoncourt , Ji Young Lee , Peter Szolovits

Named Entity Recognition (NER) is a critical component of Natural Language Processing (NLP) for extracting structured information from unstructured text. However, for low-resource languages like Catalan, the performance of NER systems often…

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

信息检索 · 计算机科学 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Identifying named entities such as a person, location or organization, in documents can highlight key information to readers. Training Named Entity Recognition (NER) models requires an annotated data set, which can be a time-consuming…

计算与语言 · 计算机科学 2022-12-20 Ting Wai Terence Au , Ingemar J. Cox , Vasileios Lampos

Training a Named Entity Recognition (NER) model often involves fixing a taxonomy of entity types. However, requirements evolve and we might need the NER model to recognize additional entity types. A simple approach is to re-annotate entire…

Training a neural network-based biomedical named entity recognition (BioNER) model usually requires extensive and costly human annotations. While several studies have employed multi-task learning with multiple BioNER datasets to reduce…

计算与语言 · 计算机科学 2024-12-31 Yu Yin , Hyunjae Kim , Xiao Xiao , Chih Hsuan Wei , Jaewoo Kang , Zhiyong Lu , Hua Xu , Meng Fang , Qingyu Chen

Named Entity Recognition (NER) is a machine learning task that traditionally relies on supervised learning and annotated data. Acquiring such data is often a challenge, particularly in specialized fields like medical, legal, and financial…

Recognition of biomedical entities from literature is a challenging research focus, which is the foundation for extracting a large amount of biomedical knowledge existing in unstructured texts into structured formats. Using the sequence…

计算与语言 · 计算机科学 2021-05-18 Cong Sun , Zhihao Yang , Lei Wang , Yin Zhang , Hongfei Lin , Jian Wang

Named Entity Recognition (NER) is a fundamental task in the fields of natural language processing and information extraction. NER has been widely used as a standalone tool or an essential component in a variety of applications such as…

计算与语言 · 计算机科学 2020-11-25 Vladislav Mikhailov , Tatiana Shavrina

Named entity recognition (NER) aims to identify mentions of named entities in an unstructured text and classify them into predefined named entity classes. While deep learning-based pre-trained language models help to achieve good predictive…

计算与语言 · 计算机科学 2023-06-16 Ali Osman Berk Sapci , Oznur Tastan , Reyyan Yeniterzi

Biomedical named entity recognition (BNER) serves as the foundation for numerous biomedical text mining tasks. Unlike general NER, BNER require a comprehensive grasp of the domain, and incorporating external knowledge beyond training data…

计算与语言 · 计算机科学 2023-07-06 Junyi Bian , Rongze Jiang , Weiqi Zhai , Tianyang Huang , Hong Zhou , Shanfeng Zhu

Nowadays, many Natural Language Processing (NLP) tasks see the demand for incorporating knowledge external to the local information to further improve the performance. However, there is little related work on Named Entity Recognition (NER),…

计算与语言 · 计算机科学 2023-03-07 Chiao-Wei Hsu , Keh-Yih Su

Supervised machine learning assumes the availability of fully-labeled data, but in many cases, such as low-resource languages, the only data available is partially annotated. We study the problem of Named Entity Recognition (NER) with…

计算与语言 · 计算机科学 2019-09-23 Stephen Mayhew , Snigdha Chaturvedi , Chen-Tse Tsai , Dan Roth

A large amount of information in today's world is now stored in knowledge bases. Named Entity Recognition (NER) is a process of extracting, disambiguation, and linking an entity from raw text to insightful and structured knowledge bases.…

计算与语言 · 计算机科学 2024-11-11 Monica Munnangi

In the field of Natural Language Processing (NLP), Named Entity Recognition (NER) is recognized as a critical technology, employed across a wide array of applications. Traditional methodologies for annotating datasets for NER models are…

计算与语言 · 计算机科学 2025-01-03 Yuji Naraki , Ryosuke Yamaki , Yoshikazu Ikeda , Takafumi Horie , Kotaro Yoshida , Ryotaro Shimizu , Hiroki Naganuma

In the domain of Natural Language Processing (NLP), Named Entity Recognition (NER) stands out as a pivotal mechanism for extracting structured insights from unstructured text. This manuscript offers an exhaustive exploration into the…

计算与语言 · 计算机科学 2023-09-26 Kalyani Pakhale