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In microtubule-based active nematics, motor-driven extensile motion of microtubule bundles powers chaotic large-scale dynamics. We quantify the interfilament sliding motion both in isolated bundles and in a dense active nematic. The…

A nematic liquid crystal in contact with a grating surface possessing an alternating stripe pattern of locally homeotropic and planar anchoring is studied within the Frank--Oseen model. The combination of both chemical and geometrical…

软凝聚态物质 · 物理学 2009-11-11 L. Harnau , S. Kondrat , A. Poniewierski

We examine the dynamics of a compressible active nematic liquid crystal on a frictional substrate. When frictional damping dominates over viscous dissipation, we eliminate flow in favor of active stresses to obtain a minimal dynamical model…

软凝聚态物质 · 物理学 2016-11-07 Pragya Srivastava , Prashant Mishra , M. Cristina Marchetti

Living materials at different length scales manifest active nematic features such as orientational order, nematic topological defects, and active nematic turbulence. Using numerical simulations we investigate the impact of fluid inertia on…

软凝聚态物质 · 物理学 2022-08-10 Roozbeh Saghatchi , Mehmet Yildiz , Amin Doostmohammadi

We develop an approximate, analytical model for the velocity of defects in active nematics by combining recent results for the velocity of topological defects in nematic liquid crystals with the flow field generated from individual defects…

软凝聚态物质 · 物理学 2024-11-27 Cody D. Schimming , C. J. O. Reichhardt , C. Reichhardt

Controlling interfaces of phase separating fluid mixtures is key to creating diverse functional soft materials. Traditionally, this is accomplished with surface-modifying chemical agents. Using experiment and theory, we study how mechanical…

软凝聚态物质 · 物理学 2022-08-15 Raymond Adkins , Itamar Kolvin , Zhihong You , Sven Witthaus , M. Cristina Marchetti , Zvonimir Dogic

We investigate the effect of an anisotropic substrate on the turbulent dynamics of a simulated two dimensional active nematic. This is introduced as an anisotropic friction and an effective anisotropic viscosity, with the orientation of the…

软凝聚态物质 · 物理学 2019-06-12 D. J. G. Pearce

Hybrid models of chemotaxis combine agent-based models of cells with partial differential equation models of extracellular chemical signals. In this paper, travelling wave properties of hybrid models of bacterial chemotaxis are…

生物物理 · 物理学 2013-02-13 Benjamin Franz , Chuan Xue , Kevin J. Painter , Radek Erban

We propose a computational framework to study the growth and spread of bacterial biofilms on interfaces, as well as the action of antibiotics on them. Bacterial membranes are represented by boundaries immersed in a fluid matrix and subject…

细胞行为 · 定量生物学 2022-01-11 Ana Carpio , Rafael Gonzalez-Albaladejo

This study systematically investigates the dynamics of the bacterial transition from free-swimming to surface adhesion, a process characterized by both height $h$ and inclination angle $\Psi$. The surface entrapment process is divided into…

软凝聚态物质 · 物理学 2025-06-25 Baopi Liu , Bowen Jin , Ning An

Biomolecular condensates help organize the cell cytoplasm and nucleoplasm into spatial compartments with different chemical compositions. A key feature of such compositional patterning is the local enrichment of enzymatically active…

生物物理 · 物理学 2024-08-06 Andriy Goychuk , Leonardo Demarchi , Ivan Maryshev , Erwin Frey

Ratchet effects can arise for single or collectively interacting Brownian particles on an asymmetric substrate when a net dc transport is produced by an externally applied ac driving force or by periodically flashing the substrate.…

软凝聚态物质 · 物理学 2017-12-06 C. J. Olson Reichhardt , C. Reichhardt

This article presents a multi-physics methodology for the numerical simulation of physical systems that involve the non-linear interaction of multi-phase reactive fluids and elastoplastic solids, inducing high strain-rates and high…

计算物理 · 物理学 2021-06-04 Tim Wallis , Philip T. Barton , Nikolaos Nikiforakis

Incorporating the inherent heterogeneity of living systems into models of active nematics is essential to provide a more realistic description of biological processes such as bacterial growth, cell dynamics and tissue development.…

软凝聚态物质 · 物理学 2024-11-06 Alexander J. H. Houston , Nigel J. Mottram

We use linear stability analysis and hybrid lattice Boltzmann simulations to study the dynamical behaviour of an active nematic confined in a channel made of viscoelastic material. We find that the quiescent, ordered active nematic is…

软凝聚态物质 · 物理学 2023-12-20 Francesco Mori , Saraswat Bhattacharyya , Julia M. Yeomans , Sumesh P. Thampi

We study colloidal particles in a nematic-liquid-crystal-filled microfluidic channel and show how elastic interactions between the particle and the channel wall lead to different particle dynamics compared with conventional microfluidics.…

软凝聚态物质 · 物理学 2017-07-31 Sourav Mondal , Apala Majumdar , Ian M. Griffiths

A coupled system composed of a Newtonian fluid located on a sinusoidally-forced elastic solid is studied analytically and numerically. The focus is on the transient evolution from the beginning of the forced oscillations and on the periodic…

流体动力学 · 物理学 2026-01-16 Aaron D'Cruz , Pierre Ricco

This letter addresses the issue of interfacial crack propagation mechanisms on various interfaces with using molecular dynamics. Four different interfacial crack propagation manners are recognized by MD simulations: 1, the crack propagates…

材料科学 · 物理学 2016-01-13 Yanguang Zhou , Zhenyu Yang , Tao Wang , Dayong Hu , Xiaobing Ma

We study acoustic modes of a close-packed hexagonal lattice of spheres adhered to a substrate, propagating along a high-symmetry direction. The model, accounting for both normal and shear coupling between the spheres and between the spheres…

Neural field equations model population dynamics of large-scale networks of neurons. Wave propagation in neural fields is often studied by constructing traveling wave solutions in the wave coordinate frame. Nonequilibrium dynamics are more…

斑图形成与孤子 · 物理学 2018-01-19 Gregory Faye , Zachary P Kilpatrick