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Transcript enumeration methods such as SAGE, MPSS, and sequencing-by-synthesis EST ``digital northern'', are important high-throughput techniques for digital gene expression measurement. As other counting or voting processes, these…

定量方法 · 定量生物学 2013-10-29 Ricardo ZN Vêncio , Leonardo Varuzza , Carlos AB Pereira , Helena Brentani , Ilya Shmulevich

The evolution of many dynamical systems that describe relationships or interactions between objects can be effectively modeled by temporal networks, which are typically represented as a sequence of static network snapshots. In this paper,…

社会与信息网络 · 计算机科学 2025-07-11 Filip Blašković , Tim O. F. Conrad , Stefan Klus , Nataša Djurdjevac Conrad

Despite compelling theoretical arguments, the use of clusters as cosmological probes is, in practice, frequently questioned because of the many uncertainties impinging on cluster mass estimates. Our aim is to develop a fully self-consistent…

宇宙学与河外天体物理 · 物理学 2017-11-29 M. Pierre , A. Valotti , L. Faccioli , N. Clerc , R. Gastaud , E. Koulouridis , F. Pacaud

We propose two related unsupervised clustering algorithms which, for input, take data assumed to be sampled from a uniform distribution supported on a metric space $X$, and output a clustering of the data based on the selection of a…

机器学习 · 计算机科学 2022-09-28 Antonio Rieser

High-dimensional omics datasets are routinely visualized as heatmaps, where color intensities reveal co-expression patterns and correlations. However, modern omics technologies increasingly generate matrices so large that existing visual…

基因组学 · 定量生物学 2026-04-21 Osho Rawal , Rex Lu , Edgar Gonzalez-Kozlova , Sacha Gnjatic , Zeynep H. Gümüş

Spatial clustering has been widely used for spatial data mining and knowledge discovery. An ideal multivariate spatial clustering should consider both spatial contiguity and aspatial attributes. Existing spatial clustering approaches may…

机器学习 · 计算机科学 2022-04-01 Yuhao Kang , Kunlin Wu , Song Gao , Ignavier Ng , Jinmeng Rao , Shan Ye , Fan Zhang , Teng Fei

Nested sampling is an efficient algorithm for the calculation of the Bayesian evidence and posterior parameter probability distributions. It is based on the step-by-step exploration of the parameter space by Monte Carlo sampling with a…

统计计算 · 统计学 2024-01-30 M. Trassinelli , Pierre Ciccodicola

Galaxy groups and clusters are formidable cosmological probes. They permit the studying of the environmental effects on galaxy formation. A reliable detection of galaxy groups is an open problem and is important for ongoing and future…

宇宙学与河外天体物理 · 物理学 2018-10-17 Elmo Tempel , Maarja Kruuse , Rain Kipper , Taavi Tuvikene , Jenny G. Sorce , Radu S. Stoica

The existing open cluster membership determination algorithms are either prior dependent on some known parameters of clusters or are not automatable to large samples of clusters. In this paper, we present, ML-MOC, a new machine learning…

天体物理仪器与方法 · 物理学 2021-02-16 Manan Agarwal , Khushboo K. Rao , Kaushar Vaidya , Souradeep Bhattacharya

We present a novel approach for finding and evaluating structural models of small metallic nanoparticles. Rather than fitting a single model with many degrees of freedom, the approach algorithmically builds libraries of nanoparticle…

Cluster analysis is an unsupervised learning strategy that can be employed to identify subgroups of observations in data sets of unknown structure. This strategy is particularly useful for analyzing high-dimensional data such as microarray…

统计方法学 · 统计学 2016-10-07 Erika S. Helgeson , Eric Bair

Co-clustering is a specific type of clustering that addresses the problem of finding groups of objects without necessarily considering all attributes. This technique has shown to have more consistent results in high-dimensional sparse data…

机器学习 · 计算机科学 2021-10-28 Yuri Santos , Jônata Tyska , Vania Bogorny

We present a detailed study of the morphological features of 22 rich galaxy clusters. Our sample is constructed from a cross-correlation of optical (Abell+APM) data with X-ray (0.1 - 2.4) keV ROSAT pointed observations. We systematically…

天体物理学 · 物理学 2009-10-31 Vaggelis Kolokotronis , Spyros Basilakos , Manolis Plionis , Ioannis Georgantopoulos

The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

基因组学 · 定量生物学 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Functional data present unique challenges for clustering due to their infinite-dimensional nature and potential sensitivity to outliers. An extension of the OCLUST algorithm to the functional setting is proposed to address these issues. The…

机器学习 · 统计学 2025-08-06 Katharine M. Clark , Paul D. McNicholas

The TexOx Cluster (TOC) Survey uses overdensities of radiosources in the NVSS to trace clusters of galaxies. The links between radiosources and rich environments make this a powerful way to find clusters which may potentially be overlooked…

天体物理学 · 物理学 2009-11-07 Steve Croft , Steve Rawlings , Gary J. Hill

Galaxy cluster mass halos ("clusters") in a dark matter simulation are matched to nodes in several different cosmic webs found using the Disperse cosmic web finder. The webs have different simulation smoothings and Disperse parameter…

宇宙学与河外天体物理 · 物理学 2022-04-07 J. D. Cohn

Biclustering is a two way clustering approach involving simultaneous clustering along two dimensions of the data matrix. Finding biclusters of web objects (i.e. web users and web pages) is an emerging topic in the context of web usage…

神经与进化计算 · 计算机科学 2011-06-14 R. Rathipriya , Dr. K. Thangavel , J. Bagyamani

Aims. We develop, test and characterise of a new statistical tool (intelligent system) for the sifting and analysis of nearby young open cluster (NYOC) populations. Methods. Using a Bayesian formalism, this statistical tool is able to…

太阳与恒星天体物理 · 物理学 2018-09-19 J. Olivares , L. M. Sarro , E. Moraux , A. Berihuete , H. Bouy , S. Hernandéz-Jiménez , E. Bertin , P. A. B. Galli , N. Huelamo , J. Bouvier , D. Barrado

We present a new cluster-finding algorithm based on a combination of the Voronoi Tessellation and Friends-Of-Friends methods. The algorithm utilises probability distribution functions derived from a photometric redshift analysis and is…

天体物理学 · 物理学 2007-05-23 Lee Clewley , Caroline van Breukelen , David Bonfield