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Physical limit of molecular sensing has been extensively studied in biological systems. Biosensors are engineered equivalents of molecular sensors in living systems and play critical role in disease diagnosis and management. Investigation…

生物物理 · 物理学 2021-08-10 Tuhin Chakrabortty , Manoj M Varma

Berg and Purcell [Biophys. J. 20, 193 (1977)] calculated how the accuracy of concentration sensing by single-celled organisms is limited by noise from the small number of counted molecules. Here we generalize their results to the sensing of…

分子网络 · 定量生物学 2011-11-28 Thierry Mora , Ned S. Wingreen

How cells reliably infer information about their environment is a fundamentally important question. While sensing and signaling generally start with cell-surface receptors, the degree of accuracy with which a cell can measure external…

生物物理 · 物理学 2016-01-20 Gerardo Aquino , Ned S. Wingreen , Robert G. Endres

Clinical biosensors with low detection limit hold significant promise in the early diagnosis of debilitating diseases. Recent progress in sensor development has led to the demonstration of detection capable of detecting target molecules…

医学物理 · 物理学 2019-12-05 Tuhin Chakrabortty , Chandra R. Murthy , Manoj Varma

In biological cells and novel diagnostic devices biochemical receptors need to be sensitive to extremely small concentration changes of signaling molecules. The accuracy of such molecular signaling is ultimately limited by the counting…

亚细胞过程 · 定量生物学 2023-04-06 Aljaz Godec , Ralf Metzler

Accurate sensing of chemical concentrations is essential for numerous biological processes. The accuracy of this sensing, for small numbers of molecules, is limited by shot noise. Corresponding theoretical limits on sensing precision, as a…

生物物理 · 物理学 2026-02-09 Ketevan Danelia , Sean A. Ridout , Ilya Nemenman

When cells measure concentrations of chemical signals, they may average multiple measurements over time in order to reduce noise in their measurements. However, when cells are in a environment that changes over time, past measurements may…

细胞行为 · 定量生物学 2025-03-05 Aparajita Kashyap , Wei Wang , Brian A. Camley

The precision of concentration sensing is improved when cells communicate. Here we derive the physical limits to concentration sensing for cells that communicate over short distances by directly exchanging small molecules (juxtacrine…

生物物理 · 物理学 2017-03-15 Sean Fancher , Andrew Mugler

Biological cells are able to accurately sense chemicals with receptors at their surfaces, allowing cells to move towards sources of attractant and away from sources of repellent. The accuracy of sensing chemical concentration is ultimately…

亚细胞过程 · 定量生物学 2015-05-14 Robert G. Endres , Ned S. Wingreen

In recent years experiments have demonstrated that living cells can measure low chemical concentrations with high precision, and much progress has been made in understanding what sets the fundamental limit to the precision of chemical…

分子网络 · 定量生物学 2015-05-26 Pieter Rein ten Wolde , Nils B. Becker , Thomas E. Ouldridge , A. Mugler

Microorganisms like bacteria can sense concentration of chemo-attractants in its medium very accurately. They achieve this through interaction between the receptors on their cell surface and the chemo-attractant molecules (like sugar). But…

软凝聚态物质 · 物理学 2015-06-04 Surya K. Ghosh , Tapanendu Kundu , Anirban Sain

Information transmission in biological signaling circuits has often been described using the metaphor of a noise filter. Cellular systems need accurate, real-time data about their environmental conditions, but the biochemical reaction…

分子网络 · 定量生物学 2019-02-27 David Hathcock , James Sheehy , Casey Weisenberger , Efe Ilker , Michael Hinczewski

Bacterial sensor systems can be used for the detection and measurement of molecular signal concentrations. The dynamics of the sensor directly depend on the biological properties of the bacterial sensor cells; manipulation of these features…

Cells adapt to changing environments by sensing ligand concentrations using specific receptors. The accuracy of sensing is ultimately limited by the finite number of ligand molecules bound by receptors. Previously derived physical limits to…

亚细胞过程 · 定量生物学 2019-11-13 Thierry Mora , Ilya Nemenman

Living cells often need to extract information from biochemical signals that are noisy. We study how accurately cells can measure chemical concentrations with signaling networks that are linear. For stationary signals of long duration, they…

分子网络 · 定量生物学 2015-06-11 Christopher C. Govern , Pieter Rein ten Wolde

To adapt their behaviour in changing environments, cells sense concentrations by binding external ligands to their receptors. However, incorrect ligands may bind nonspecifically to receptors, and when their concentration is large, this…

分子网络 · 定量生物学 2015-07-23 Thierry Mora

Biological cells sense external chemical stimuli in their environment using cell-surface receptors. To increase the sensitivity of sensing, receptors often cluster, most noticeably in bacterial chemotaxis, a paradigm for signaling and…

生物物理 · 物理学 2015-05-27 Gerardo Aquino , Diana Clausznitzer , Sylvain Tollis , Robert G. Endres

Cells sense and predict their environment via energy-dissipating pathways. However, it is unclear whether dissipation helps or harms prediction. Here we study dissipation and prediction for a minimal sensory module of receptors that…

分子网络 · 定量生物学 2013-12-20 Nils B. Becker , Andrew Mugler , Pieter Rein ten Wolde

The reliable detection of environmental molecules in the presence of noise is an important cellular function, yet the underlying computational mechanisms are not well understood. We introduce a model of two interacting sensors which allows…

生物物理 · 物理学 2020-02-25 Vudtiwat Ngampruetikorn , David J. Schwab , Greg J. Stephens

Many crucial biological processes operate with surprisingly small numbers of molecules, and there is renewed interest in analyzing the impact of noise associated with these small numbers. Twenty--five years ago, Berg and Purcell showed that…

生物物理 · 物理学 2007-05-23 W. Bialek , S. Setayeshgar
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