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Deep learning models have demonstrated superior performance in various healthcare applications. However, the major limitation of these deep models is usually the lack of high-quality training data due to the private and sensitive nature of…

计算与语言 · 计算机科学 2022-11-15 Qiuhao Lu , Dejing Dou , Thien Huu Nguyen

The way we analyse clinical texts has undergone major changes over the last years. The introduction of language models such as BERT led to adaptations for the (bio)medical domain like PubMedBERT and ClinicalBERT. These models rely on large…

计算与语言 · 计算机科学 2023-09-15 Tom van Sonsbeek , Xiantong Zhen , Marcel Worring

Existing pre-trained models for knowledge-graph-to-text (KG-to-text) generation simply fine-tune text-to-text pre-trained models such as BART or T5 on KG-to-text datasets, which largely ignore the graph structure during encoding and lack…

计算与语言 · 计算机科学 2021-06-22 Pei Ke , Haozhe Ji , Yu Ran , Xin Cui , Liwei Wang , Linfeng Song , Xiaoyan Zhu , Minlie Huang

Graphs can model complex relationships between objects, enabling a myriad of Web applications such as online page/article classification and social recommendation. While graph neural networks(GNNs) have emerged as a powerful tool for graph…

机器学习 · 计算机科学 2023-02-28 Zemin Liu , Xingtong Yu , Yuan Fang , Xinming Zhang

The problem of session-aware recommendation aims to predict users' next click based on their current session and historical sessions. Existing session-aware recommendation methods have defects in capturing complex item transition…

信息检索 · 计算机科学 2021-01-28 Mengqi Zhang , Shu Wu , Meng Gao , Xin Jiang , Ke Xu , Liang Wang

In the past decade, with the development of big data technology, an increasing amount of patient information has been stored as electronic health records (EHRs). Leveraging these data, various doctor recommendation systems have been…

信息检索 · 计算机科学 2022-07-14 Luning Bi , Yunlong Wang , Fan Zhang , Zhuqing Liu , Yong Cai , Emily Zhao

Language model based pre-trained models such as BERT have provided significant gains across different NLP tasks. In this paper, we study different types of transformer based pre-trained models such as auto-regressive models (GPT-2),…

计算与语言 · 计算机科学 2021-02-02 Varun Kumar , Ashutosh Choudhary , Eunah Cho

Transformer-based models have achieved remarkable success in natural language and vision tasks, but their application to gene expression analysis remains limited due to data sparsity, high dimensionality, and missing values. We present…

机器学习 · 计算机科学 2025-04-15 Shuai Jiang , Saeed Hassanpour

We introduce HUBERT which combines the structured-representational power of Tensor-Product Representations (TPRs) and BERT, a pre-trained bidirectional Transformer language model. We show that there is shared structure between different NLP…

计算与语言 · 计算机科学 2021-04-27 Mehrad Moradshahi , Hamid Palangi , Monica S. Lam , Paul Smolensky , Jianfeng Gao

We study the problem of incorporating prior knowledge into a deep Transformer-based model,i.e.,Bidirectional Encoder Representations from Transformers (BERT), to enhance its performance on semantic textual matching tasks. By probing and…

计算与语言 · 计算机科学 2021-02-23 Tingyu Xia , Yue Wang , Yuan Tian , Yi Chang

Fine-tuned Bidirectional Encoder Representations from Transformers (BERT)-based sequence classification models have proven to be effective for detecting Alzheimer's Disease (AD) from transcripts of human speech. However, previous research…

计算与语言 · 计算机科学 2020-11-13 Aparna Balagopalan , Jekaterina Novikova

Deep-learning-based clinical decision support using structured electronic health records (EHR) has been an active research area for predicting risks of mortality and diseases. Meanwhile, large amounts of narrative clinical notes provide…

计算与语言 · 计算机科学 2023-05-10 Weimin Lyu , Xinyu Dong , Rachel Wong , Songzhu Zheng , Kayley Abell-Hart , Fusheng Wang , Chao Chen

The growing use of deep learning necessitates efficient network design and deployment, making neural predictors vital for estimating attributes such as accuracy and latency. Recently, Graph Neural Networks (GNNs) and transformers have shown…

机器学习 · 计算机科学 2025-07-02 Ruihan Xu , Haokui Zhang , Yaowei Wang , Wei Zeng , Shiliang Zhang

Sequential recommendation (SR) aims to predict the next purchasing item according to users' dynamic preference learned from their historical user-item interactions. To improve the performance of recommendation, learning dynamic…

信息检索 · 计算机科学 2024-12-31 Chuan He , Yongchao Liu , Qiang Li , Weiqiang Wang , Xin Fu , Xinyi Fu , Chuntao Hong , Xinwei Yao

Reinforcement Learning (RL) methods used for solving real-world optimization problems often involve dynamic state-action spaces, larger scale, and sparse rewards, leading to significant challenges in convergence, scalability, and efficient…

机器学习 · 计算机科学 2025-09-29 Stavros Orfanoudakis , Nanda Kishor Panda , Peter Palensky , Pedro P. Vergara

The inference of gene regulatory networks (GRNs) is a foundational stride towards deciphering the fundamentals of complex biological systems. Inferring a possible regulatory link between two genes can be formulated as a link prediction…

机器学习 · 计算机科学 2025-04-25 Binon Teji , Swarup Roy

Graph Neural Networks are notorious for its memory consumption. A recent Transformer-based GNN called Graph Transformer is shown to obtain superior performances when long range dependencies exist. However, combining graph data and…

机器学习 · 计算机科学 2024-03-25 Eugene Ku

Aiming at the limitations of traditional medical decision system in processing large-scale heterogeneous medical data and realizing highly personalized recommendation, this paper introduces a personalized medical decision algorithm…

机器学习 · 计算机科学 2024-05-29 Yafeng Yan , Shuyao He , Zhou Yu , Jiajie Yuan , Ziang Liu , Yan Chen

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved state-of-the-art performance in tasks such as node classification and link prediction. However, most existing GNNs are designed to learn…

机器学习 · 计算机科学 2020-02-06 Seongjun Yun , Minbyul Jeong , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

With the rapid development of online multimedia services, especially in e-commerce platforms, there is a pressing need for personalised recommendation systems that can effectively encode the diverse multi-modal content associated with each…

人工智能 · 计算机科学 2024-07-30 Zixuan Yi , Iadh Ounis