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Mesh-like structures, such as mucus gel or cytoskeleton networks, are ubiquitous in biological systems. These intricate structures are composed of cross-linked, semi-flexible bio-filaments, crucial to numerous biological processes. In many…

软凝聚态物质 · 物理学 2024-01-10 Yeongjin Kim , Won Kyu Kim , Jae-Hyung Jeon

Discrete-time modeling of acoustic, mechanical and electrical systems is a prominent topic in the musical signal processing literature. Such models are mostly derived by discretizing a mathematical model, given in terms of ordinary or…

Is a deep learning model capable of understanding systems governed by certain first principle laws by only observing the system's output? Can deep learning learn the underlying physics and honor the physics when making predictions? The…

计算物理 · 物理学 2020-06-11 Rohan Thavarajah , Xiang Zhai , Zheren Ma , David Castineira

Sophisticated multilayer neural networks have achieved state of the art results on multiple supervised tasks. However, successful applications of such multilayer networks to control have so far been limited largely to the perception portion…

机器学习 · 计算机科学 2013-11-08 Sergey Levine

Predicting the rheological behavior of associative polymers bridging colloidal particles into transient networks is fundamentally challenging because the coupled spatiotemporal scales prevent efficient molecular-fidelity modeling. We…

软凝聚态物质 · 物理学 2026-02-17 Jalal Abdolahi , Dominic M. Robe , Ronald G. Larson , Elnaz Hajizadeh

While deep neural networks take loose inspiration from neuroscience, it is an open question how seriously to take the analogies between artificial deep networks and biological neuronal systems. Interestingly, recent work has shown that deep…

神经元与认知 · 定量生物学 2018-05-31 William Lotter , Gabriel Kreiman , David Cox

The generation of molecules with Artificial Intelligence (AI) is poised to revolutionize materials discovery. Potential applications range from development of potent drugs to efficient carbon capture and separation technologies. However,…

Deep learning has emerged as a powerful framework for analyzing biomolecular dynamics trajectories, enabling efficient representations that capture essential system dynamics and facilitate mechanistic studies. We propose a neural network…

生物大分子 · 定量生物学 2025-11-25 Guanghong Zuo

As deep neural networks (DNNs) become deeper, the training time increases. In this perspective, multi-GPU parallel computing has become a key tool in accelerating the training of DNNs. In this paper, we introduce a novel methodology to…

数值分析 · 数学 2024-07-08 Chang-Ock Lee , Youngkyu Lee , Jongho Park

Machine learning methods have shown promise in predicting molecular properties, and given sufficient training data machine learning approaches can enable rapid high-throughput virtual screening of large libraries of compounds. Graph-based…

How can we build agents that keep learning from experience, quickly and efficiently, after their initial training? Here we take inspiration from the main mechanism of learning in biological brains: synaptic plasticity, carefully tuned by…

神经与进化计算 · 计算机科学 2018-08-01 Thomas Miconi , Jeff Clune , Kenneth O. Stanley

We show that neural networks trained by evolutionary reinforcement learning can enact efficient molecular self-assembly protocols. Presented with molecular simulation trajectories, networks learn to change temperature and chemical potential…

统计力学 · 物理学 2020-06-01 Stephen Whitelam , Isaac Tamblyn

Physical networks, such as biological neural networks, can learn desired functions without a central processor, using local learning rules in space and time to learn in a fully distributed manner. Learning approaches such as equilibrium…

无序系统与神经网络 · 物理学 2022-05-17 Menachem Stern , Sam Dillavou , Marc Z. Miskin , Douglas J. Durian , Andrea J. Liu

We present our progress on the application of physics informed deep learning to reservoir simulation problems. The model is a neural network that is jointly trained to respect governing physical laws and match boundary conditions. The…

流体动力学 · 物理学 2021-04-26 Cedric Fraces Gasmi , Hamdi Tchelepi

Deep learning has received much attention lately due to the impressive empirical performance achieved by training algorithms. Consequently, a need for a better theoretical understanding of these problems has become more evident in recent…

机器学习 · 计算机科学 2022-03-03 Daniel Bienstock , Gonzalo Muñoz , Sebastian Pokutta

We use a simple and efficient computer model to investigate the physical properties of bilayer membranes. The amphiphilic molecules are modeled as short rigid trimers with finite range pair interactions between them. The pair potentials…

软凝聚态物质 · 物理学 2009-11-10 Oded Farago

Analysis of molecular scale interactions and chemical structure offers an enormous opportunity to tune material properties for targeted applications. However, designing materials from molecular scale is a grand challenge owing to the…

材料科学 · 物理学 2021-11-19 Praneeth S Ramesh , Tarak K Patra

Polymer informatics tools have been recently gaining ground to efficiently and effectively develop, design, and discover new polymers that meet specific application needs. So far, however, these data-driven efforts have largely focused on…

材料科学 · 物理学 2021-07-05 Christopher Künneth , William Schertzer , Rampi Ramprasad

Polymer electrolytes are promising candidates for the next generation lithium-ion battery technology. Large scale screening of polymer electrolytes is hindered by the significant cost of molecular dynamics (MD) simulation in amorphous…

We study the diffusion of a linear polymer in the presence of permeable membranes without excluded volume interactions, using scaling theory and Monte Carlo simulations. We find that the average time it takes for a chain with polymerization…

凝聚态物理 · 物理学 2016-08-31 Hyoungsoo Yoon , J. M. Deutsch