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With access to large datasets, deep neural networks (DNN) have achieved human-level accuracy in image and speech recognition tasks. However, in chemistry, data is inherently small and fragmented. In this work, we develop an approach of…

机器学习 · 统计学 2018-08-16 Garrett B. Goh , Charles Siegel , Abhinav Vishnu , Nathan O. Hodas

The meteoric rise of deep learning models in computer vision research, having achieved human-level accuracy in image recognition tasks is firm evidence of the impact of representation learning of deep neural networks. In the chemistry…

机器学习 · 统计学 2018-08-17 Garrett B. Goh , Charles Siegel , Abhinav Vishnu , Nathan O. Hodas , Nathan Baker

Machine learning-based interatomic potentials and force fields depend critically on accurate atomic structures, yet such data are scarce due to the limited availability of experimentally resolved crystals. Although atomic-resolution…

Accurate prediction of compound potency accelerates early-stage drug discovery by prioritizing candidates for experimental testing. However, many Quantitative Structure-Activity Relationship (QSAR) approaches for this prediction are…

机器学习 · 计算机科学 2026-01-13 Sabrina Islam , Md. Atiqur Rahman , Md. Bakhtiar Hasan , Md. Hasanul Kabir

Predicting the interaction between a compound and a target is crucial for rapid drug repurposing. Deep learning has been successfully applied in drug-target affinity (DTA) problem. However, previous deep learning-based methods ignore…

机器学习 · 计算机科学 2020-09-29 Tri Minh Nguyen , Thin Nguyen , Thao Minh Le , Truyen Tran

The metabolic wiring of patient cells is altered drastically in many diseases, including cancer. Understanding the nature of such changes may pave the way for new therapeutic opportunities, as well as the development of personalized…

分子网络 · 定量生物学 2020-02-12 Ali Cakmak , M. Hasan Celik

Advertising and feed ranking are essential to many Internet companies such as Facebook. Among many real-world advertising and feed ranking systems, click through rate (CTR) prediction plays a central role. In recent years, many neural…

机器学习 · 计算机科学 2020-07-08 Tongwen Huang , Qingyun She , Zhiqiang Wang , Junlin Zhang

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

化学物理 · 物理学 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

Transfer learning using deep neural networks as feature extractors has become increasingly popular over the past few years. It allows to obtain state-of-the-art accuracy on datasets too small to train a deep neural network on its own, and…

机器学习 · 计算机科学 2017-10-25 Vincent Gripon , Ghouthi B. Hacene , Matthias Löwe , Franck Vermet

Artificial intelligence (AI) has been widely applied in drug discovery with a major task as molecular property prediction. Despite booming techniques in molecular representation learning, key elements underlying molecular property…

定量方法 · 定量生物学 2023-09-06 Jianyuan Deng , Zhibo Yang , Hehe Wang , Iwao Ojima , Dimitris Samaras , Fusheng Wang

Foundation models have significantly advanced medical image analysis through the pre-train fine-tune paradigm. Among various fine-tuning algorithms, Parameter-Efficient Fine-Tuning (PEFT) is increasingly utilized for knowledge transfer…

计算机视觉与模式识别 · 计算机科学 2024-06-11 Raman Dutt , Linus Ericsson , Pedro Sanchez , Sotirios A. Tsaftaris , Timothy Hospedales

Predicting whether a molecule can cross the blood-brain barrier (BBB) is a key step in early-stage neuro-pharmaceutical design, directly influencing the efficiency and success rate of drug development. Traditional methods based on…

定量方法 · 定量生物学 2026-03-16 Zihan Yang , Yuchen Xiao

Accurate prediction of drug-target binding affinity can accelerate drug discovery by prioritizing promising compounds before costly wet-lab screening. While deep learning has advanced this task, most models fuse ligand and protein…

机器学习 · 计算机科学 2025-09-26 Mohammadsaleh Refahi , Bahrad A. Sokhansanj , James R. Brown , Gail Rosen

Neural message passing on molecular graphs is one of the most promising methods for predicting formation energy and other properties of molecules and materials. In this work we extend the neural message passing model with an edge update…

机器学习 · 统计学 2018-06-11 Peter Bjørn Jørgensen , Karsten Wedel Jacobsen , Mikkel N. Schmidt

Data-driven prediction of molecular properties presents unique challenges to the design of machine learning methods concerning data structure/dimensionality, symmetry adaption, and confidence management. In this paper, we present a…

机器学习 · 计算机科学 2019-01-31 Yu-Hang Tang , Wibe A. de Jong

Following the rapidly growing digital image usage, automatic image categorization has become preeminent research area. It has broaden and adopted many algorithms from time to time, whereby multi-feature (generally, hand-engineered features)…

计算机视觉与模式识别 · 计算机科学 2017-05-12 Thangarajah Akilan , Q. M. Jonathan Wu , Wei Jiang

Predicting drug properties is key in drug discovery to enable de-risking of assets before expensive clinical trials, and to find highly active compounds faster. Interest from the Machine Learning community has led to the release of a…

Advanced Persistent Threats (APTs) evolve through multiple stages, each exhibiting distinct temporal and structural behaviors. Accurate stage estimation is critical for enabling adaptive cyber defense. This paper presents StageFinder, a…

密码学与安全 · 计算机科学 2026-05-06 Trung V. Phan , Thomas Bauschert

In the field of image-based drug discovery, capturing the phenotypic response of cells to various drug treatments and perturbations is a crucial step. However, existing methods require computationally extensive and complex multi-step…

In computer-aided diagnosis tools employed for skin cancer treatment and early diagnosis, skin lesion segmentation is important. However, achieving precise segmentation is challenging due to inherent variations in appearance, contrast,…

计算机视觉与模式识别 · 计算机科学 2024-09-10 Asim Naveed , Syed S. Naqvi , Tariq M. Khan , Shahzaib Iqbal , M. Yaqoob Wani , Haroon Ahmed Khan
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