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Advances in deep learning models have revolutionized the study of biomolecule systems and their mechanisms. Graph representation learning, in particular, is important for accurately capturing the geometric information of biomolecules at…

定量方法 · 定量生物学 2023-04-07 Xinye Xiong , Bingxin Zhou , Yu Guang Wang

This work presents TorchRadon -- an open source CUDA library which contains a set of differentiable routines for solving computed tomography (CT) reconstruction problems. The library is designed to help researchers working on CT problems to…

图像与视频处理 · 电气工程与系统科学 2020-10-01 Matteo Ronchetti

This paper proposes OpenPARF, an open-source placement and routing framework for large-scale FPGA designs. OpenPARF is implemented with the deep learning toolkit PyTorch and supports massive parallelization on GPU. The framework proposes a…

硬件体系结构 · 计算机科学 2023-06-30 Jing Mai , Jiarui Wang , Zhixiong Di , Guojie Luo , Yun Liang , Yibo Lin

This work introduces CTorch, a PyTorch-compatible, GPU-accelerated, and auto-differentiable projector toolbox designed to handle various CT geometries with configurable projector algorithms. CTorch provides flexible scanner geometry…

医学物理 · 物理学 2025-12-15 Xiao Jiang , Grace J. Gang , J. Webster Stayman

In this paper, we introduce MCTensor, a library based on PyTorch for providing general-purpose and high-precision arithmetic for DL training. MCTensor is used in the same way as PyTorch Tensor: we implement multiple basic, matrix-level…

机器学习 · 计算机科学 2022-08-31 Tao Yu , Wentao Guo , Jianan Canal Li , Tiancheng Yuan , Christopher De Sa

The problem of identifying geometric structure in data is a cornerstone of (unsupervised) learning. As a result, Geometric Representation Learning has been widely applied across scientific and engineering domains. In this work, we…

机器学习 · 计算机科学 2025-06-03 Imran Nasim , Melanie Weber

With the growing significance of graphs as an effective representation of data in numerous applications, efficient graph analysis using modern machine learning is receiving a growing level of attention. Deep learning approaches often…

In this work, we present a general purpose deep neural network package for representing energies, forces, dipole moments, and polarizabilities of atomistic systems. This so-called recursively embedded atom neural network model takes both…

化学物理 · 物理学 2022-04-06 Yaolong Zhang , Junfan Xia , Bin Jiang

Deep learning algorithms have made many breakthroughs and have various applications in real life. Computational resources become a bottleneck as the data and complexity of the deep learning pipeline increases. In this paper, we propose…

机器学习 · 计算机科学 2021-05-05 Salman Ahmed , Hammad Naveed

Heterogeneous graphs offer powerful data representations for traffic, given their ability to model the complex interaction effects among a varying number of traffic participants and the underlying road infrastructure. With the recent advent…

机器学习 · 计算机科学 2023-04-25 Eivind Meyer , Maurice Brenner , Bowen Zhang , Max Schickert , Bilal Musani , Matthias Althoff

Research on graph representation learning has received a lot of attention in recent years since many data in real-world applications come in form of graphs. High-dimensional graph data are often in irregular form, which makes them more…

机器学习 · 计算机科学 2020-06-03 Fenxiao Chen , Yuncheng Wang , Bin Wang , C. -C. Jay Kuo

The recent rise of deep learning has led to numerous applications, including solving partial differential equations using Physics-Informed Neural Networks. This approach has proven highly effective in several academic cases. However, their…

数值分析 · 数学 2024-10-07 Marien Chenaud , Frédéric Magoulès , José Alves

Torch Geometric Pool (tgp) is a pooling library built on top of PyTorch Geometric. Graph pooling methods differ in how they assign nodes to supernodes, how they handle batches, what they return after pooling, and whether they expose…

机器学习 · 计算机科学 2026-04-21 Carlo Abate , Ivan Marisca , Filippo Maria Bianchi

Graph representation learning aims to effectively encode high-dimensional sparse graph-structured data into low-dimensional dense vectors, which is a fundamental task that has been widely studied in a range of fields, including machine…

In this work, we present {\ae}net-PyTorch, a PyTorch-based implementation for training artificial neural network-based machine learning interatomic potentials. Developed as an extension of the atomic energy network ({\ae}net),…

无序系统与神经网络 · 物理学 2023-05-10 Jon Lopez-Zorrilla , Xabier M. Aretxabaleta , Inwon Yue , Inigo Etxebarria , Hegoi Manzano , Nongnuch Artrith

Low-precision training reduces computational cost and produces efficient models. Recent research in developing new low-precision training algorithms often relies on simulation to empirically evaluate the statistical effects of quantization…

机器学习 · 计算机科学 2019-10-11 Tianyi Zhang , Zhiqiu Lin , Guandao Yang , Christopher De Sa

Sparse matrix representations are ubiquitous in computational science and machine learning, leading to significant reductions in compute time, in comparison to dense representation, for problems that have local connectivity. The adoption of…

机器学习 · 计算机科学 2023-11-13 Nicolas Nytko , Ali Taghibakhshi , Tareq Uz Zaman , Scott MacLachlan , Luke N. Olson , Matt West

Hyperbolic geometry has emerged as an effective latent space for representing complex networks, owing to its ability to capture hierarchical organization and heterogeneous connectivity patterns using low-dimensional embeddings. As a result,…

机器学习 · 计算机科学 2026-05-01 Sofía Pérez Casulo , Marcelo Fiori , Bernardo Marenco , Federico Larroca

Probabilistic graphical models (PGMs) serve as a powerful framework for modeling complex systems with uncertainty and extracting valuable insights from data. However, users face challenges when applying PGMs to their problems in terms of…

机器学习 · 计算机科学 2024-05-29 Jiantong Jiang , Zeyi Wen , Peiyu Yang , Atif Mansoor , Ajmal Mian

We propose PyTorchGeoNodes, a differentiable module for reconstructing 3D objects and their parameters from images using interpretable shape programs. Unlike traditional CAD model retrieval, shape programs allow reasoning about semantic…

计算机视觉与模式识别 · 计算机科学 2025-04-07 Sinisa Stekovic , Arslan Artykov , Stefan Ainetter , Mattia D'Urso , Friedrich Fraundorfer