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Successful biomedical relation extraction can provide evidence to researchers and clinicians about possible unknown associations between biomedical entities, advancing the current knowledge we have about those entities and their inherent…

信息检索 · 计算机科学 2020-04-22 Diana Sousa , Francisco M. Couto

Accurately delineating the visual pathway (VP) is crucial for understanding the human visual system and diagnosing related disorders. Exploring multi-parametric MR imaging data has been identified as an important way to delineate VP.…

计算机视觉与模式识别 · 计算机科学 2025-05-27 Alou Diakite , Cheng Li , Lei Xie , Yuanjing Feng , Ruoyou Wu , Jianzhong He , Hairong Zheng , Shanshan Wang

The paper presents the application of Variational Autoencoders (VAE) for data dimensionality reduction and explorative analysis of mass spectrometry imaging data (MSI). The results confirm that VAEs are capable of detecting the patterns…

定量方法 · 定量生物学 2017-08-25 Paolo Inglese , James L. Alexander , Anna Mroz , Zoltan Takats , Robert Glen

Digitization techniques for biomedical images yield different visual patterns in radiological exams. These differences may hamper the use of data-driven approaches for inference over these images, such as Deep Neural Networks. Another…

计算机视觉与模式识别 · 计算机科学 2019-12-10 Hugo Oliveira , Edemir Ferreira , Jefersson A. dos Santos

As in many fields of medical research, survival analysis has witnessed a growing interest in the application of deep learning techniques to model complex, high-dimensional, heterogeneous, incomplete, and censored medical data. Current…

机器学习 · 计算机科学 2023-12-25 Patricia A. Apellániz , Juan Parras , Santiago Zazo

Large amounts of unlabelled data are commonplace for many applications in computational pathology, whereas labelled data is often expensive, both in time and cost, to acquire. We investigate the performance of unsupervised and supervised…

计算机视觉与模式识别 · 计算机科学 2019-07-27 Koen Dercksen , Wouter Bulten , Geert Litjens

Motivation: Despite advances in the computational analysis of high-throughput molecular profiling assays (e.g. transcriptomics), a dichotomy exists between methods that are simple and interpretable, and ones that are complex but with lower…

机器学习 · 计算机科学 2023-06-12 Pedro Henrique da Costa Avelar , Min Wu , Sophia Tsoka

Cardiovascular disease (CVD) persists as a primary cause of death on a global scale, which requires more effective and timely detection methods. Traditional supervised learning approaches for CVD detection rely heavily on large-labeled…

定量方法 · 定量生物学 2024-12-17 Shaohan Chen , Zheyan Liu , Huili Zheng , Qimin Zhang , Yiru Gong

Recent years have seen rapid development in Information Extraction, as well as its subtask, Relation Extraction. Relation Extraction is able to detect semantic relations between entities in sentences. Currently, many efficient approaches…

计算与语言 · 计算机科学 2024-03-19 Zhuang Li

Deep neural network models trained on large labeled datasets are the state-of-the-art in a large variety of computer vision tasks. In many applications, however, labeled data is expensive to obtain or requires a time consuming manual…

机器学习 · 计算机科学 2017-12-01 Sergey Tulyakov , Andrew Fitzgibbon , Sebastian Nowozin

Deep learning (DL) methods where interpretability is intrinsically considered as part of the model are required to better understand the relationship of clinical and imaging-based attributes with DL outcomes, thus facilitating their use in…

图像与视频处理 · 电气工程与系统科学 2022-12-13 Irem Cetin , Maialen Stephens , Oscar Camara , Miguel Angel Gonzalez Ballester

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

计算与语言 · 计算机科学 2020-04-08 Allen Schmaltz , Andrew Beam

Relation extraction is a fundamental problem in natural language processing. Most existing models are defined for relation extraction in the general domain. However, their performance on specific domains (e.g., biomedicine) is yet unclear.…

计算与语言 · 计算机科学 2021-12-14 Yongkang Li

Document-level Relation Extraction (DocRE) aims to identify relationships between entity pairs within a document. However, most existing methods assume a uniform label distribution, resulting in suboptimal performance on real-world,…

计算与语言 · 计算机科学 2025-01-14 Khai Phan Tran , Wen Hua , Xue Li

We address the challenge of training Vision Transformers (ViTs) when labeled data is scarce but unlabeled data is abundant. We propose Semi-Supervised Masked Autoencoder (SSMAE), a framework that jointly optimizes masked image…

计算机视觉与模式识别 · 计算机科学 2026-01-29 Atik Faysal , Mohammad Rostami , Reihaneh Gh. Roshan , Nikhil Muralidhar , Huaxia Wang

Graph representation learning is a fundamental research issue in various domains of applications, of which the inductive learning problem is particularly challenging as it requires models to generalize to unseen graph structures during…

机器学习 · 计算机科学 2024-03-27 Hanxuan Yang , Zhaoxin Yu , Qingchao Kong , Wei Liu , Wenji Mao

Part-level features are crucial for image understanding, but few studies focus on them because of the lack of fine-grained labels. Although unsupervised part discovery can eliminate the reliance on labels, most of them cannot maintain…

计算机视觉与模式识别 · 计算机科学 2025-07-17 Jiahao Xia , Yike Wu , Wenjian Huang , Jianguo Zhang , Jian Zhang

Semantic hashing is an emerging technique for large-scale similarity search based on representing high-dimensional data using similarity-preserving binary codes used for efficient indexing and search. It has recently been shown that…

机器学习 · 计算机科学 2023-08-11 Ricardo Ñanculef , Francisco Mena , Antonio Macaluso , Stefano Lodi , Claudio Sartori

In the field of machine learning, it is still a critical issue to identify and supervise the learned representation without manually intervening or intuition assistance to extract useful knowledge or serve for the downstream tasks. In this…

机器学习 · 计算机科学 2025-12-10 Shiqi Liu , Jingxin Liu , Qian Zhao , Xiangyong Cao , Huibin Li , Deyu Meng , Hongying Meng , Sheng Liu

Extracting fine-grained features such as styles from unlabeled data is crucial for data analysis. Unsupervised methods such as variational autoencoders (VAEs) can extract styles that are usually mixed with other features. Conditional VAEs…

计算机视觉与模式识别 · 计算机科学 2025-05-06 Suguru Yasutomi , Toshihisa Tanaka