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Python applications depend on third-party native libraries that may be vendored within package distributions or installed on the host system. When vulnerabilities are discovered in these native libraries, determining which Python packages…

Nearly every popular programming language comes with one or more package managers. The software packages distributed by such package managers form large software ecosystems. These packaging ecosystems contain a large number of package…

软件工程 · 计算机科学 2017-10-16 Alexandre Decan , Tom Mens , Philippe Grosjean

One of the most powerful features of R is its infrastructure for contributed code. The built-in package manager and complementary repositories provide a great system for development and exchange of code, and have played an important role in…

软件工程 · 计算机科学 2013-11-04 Jeroen Ooms

Dynamic graph embedding has emerged as an important technique for modeling complex time-evolving networks across diverse domains. While transformer-based models have shown promise in capturing long-range dependencies in temporal graph data,…

机器学习 · 计算机科学 2025-05-13 Ashish Parmanand Pandey , Alan John Varghese , Sarang Patil , Mengjia Xu

Distributed collaborative software development tends to make artifacts and decisions inconsistent and uncertain. We try to solve this problem by providing an information repository to reflect the state of works precisely, by managing the…

软件工程 · 计算机科学 2012-12-11 Phan Thi Thanh Huyen , Koichiro Ochimizu

The Model Context Protocol (MCP) has recently emerged as a standardized interface for connecting language models with external tools and data. As the ecosystem rapidly expands, the lack of a structured, comprehensive view of existing MCP…

密码学与安全 · 计算机科学 2025-07-01 Zhiwei Lin , Bonan Ruan , Jiahao Liu , Weibo Zhao

Open-source software supply chain security relies heavily on assessing affected versions of library vulnerabilities. While prior studies have leveraged exploits for verifying vulnerability affected versions, they point out a key limitation…

软件工程 · 计算机科学 2026-03-30 Zirui Chen , Qi Zhan , Jiayuan Zhou , Xing Hu , Xin Xia , Xiaohu Yang

This paper describes a data-driven framework to parse musical sequences into dependency trees, which are hierarchical structures used in music cognition research and music analysis. The parsing involves two steps. First, the input sequence…

声音 · 计算机科学 2023-06-30 Francesco Foscarin , Daniel Harasim , Gerhard Widmer

In Open Source Software, resources of any project are open for reuse by introducing dependencies or copying the resource itself. In contrast to dependency-based reuse, the infrastructure to systematically support copy-based reuse appears to…

软件工程 · 计算机科学 2025-01-30 Mahmoud Jahanshahi , David Reid , Audris Mockus

Discovering temporal lagged and inter-dependencies in multivariate time series data is an important task. However, in many real-world applications, such as commercial cloud management, manufacturing predictive maintenance, and portfolios…

机器学习 · 计算机科学 2018-12-12 Xuan-Hong Dang , Syed Yousaf Shah , Petros Zerfos

As the complexity and size of software projects increases in real-world environments, maintaining and creating maintainable and dependable code becomes harder and more costly. Refactoring is considered as a method for enhancing the internal…

软件工程 · 计算机科学 2018-11-27 Mohammad Raji

Long lived software projects encompass a large number of artifacts, which undergo many revisions throughout their history. Empirical software engineering researchers studying software evolution gather and collect datasets with millions of…

软件工程 · 计算机科学 2025-08-15 Souhaila Serbout , Diana Carolina Muñoz Hurtado , Hassan Atwi , Edoardo Riggio , Cesare Pautasso

Large Language Models have advanced automated software development, however, it remains a challenge to correctly infer dependencies, namely, identifying the internal components and external packages required for a repository to successfully…

Dependency networks (Heckerman et al., 2000) are potential probabilistic graphical models for systems comprising a large number of variables. Like Bayesian networks, the structure of a dependency network is represented by a directed graph,…

机器学习 · 计算机科学 2021-07-05 Kazuya Takabatake , Shotaro Akaho

Delivering a reproducible environment along with complex and up-to-date software stacks on thousands of distributed and heterogeneous worker nodes is a critical task. The CernVM-File System (CVMFS) has been designed to help various…

分布式、并行与集群计算 · 计算机科学 2023-03-30 Alexandre F Boyer , Christophe Haen , Federico Stagni , David R C Hill

Feature models are widely used to capture the configuration space of software systems. Although automated reasoning has been studied for detecting problematic features and supporting configuration tasks, significantly less attention has…

We present a repository decomposition system that converts large software repositories into a vectorized knowledge graph which mirrors project architectural and semantic structure, capturing semantic relationships and allowing a significant…

Much of the current software depends on open-source components, which in turn have complex dependencies on other open-source libraries. Vulnerabilities in open source therefore have potentially huge impacts. The goal of this work is to get…

软件工程 · 计算机科学 2023-05-10 Tobias Dam , Sebastian Neumaier

Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful…

机器学习 · 计算机科学 2018-03-12 Yujia Li , Oriol Vinyals , Chris Dyer , Razvan Pascanu , Peter Battaglia

Large language models (LLMs) have developed rapidly in recent years, revolutionizing various fields. Despite their widespread success, LLMs heavily rely on external code dependencies from package management systems, creating a complex and…

密码学与安全 · 计算机科学 2025-09-01 Shuhan Liu , Xing Hu , Xin Xia , David Lo , Xiaohu Yang