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We study open-ended evolution by focusing on computational and information-processing dynamics underlying major evolutionary transitions. In doing so, we consider biological organisms as hierarchical dynamical systems that generate…

We analyse the unreduced, nonperturbative dynamics of an arbitrary many-body interaction process with the help of the generalised effective potential method and reveal the well-specified universal origin of change (emergence), time and…

综合物理 · 物理学 2013-10-08 Andrei P. Kirilyuk

It is well known that life on Earth alters its environment over evolutionary and geological timescales. An important open question is whether this is a result of evolutionary optimization or a universal feature of life. In the latter case,…

适应与自组织系统 · 物理学 2017-04-26 Cole Mathis , Tanmoy Bhattacharya , Sara Imari Walker

The evolution of structure in biology is driven by accretion and change. Accretion brings together disparate parts to form bigger wholes. Change provides opportunities for growth and innovation. Here we review patterns and processes that…

其他定量生物学 · 定量生物学 2019-01-16 Derek Caetano-Anollés , Kelsey Caetano-Anollés , Gustavo Caetano-Anollés

We study the evolution of the network properties of a populated network embedded in a genotype space characterised by either a low or a high number of potential links, with particular emphasis on the connectivity and clustering. Evolution…

统计力学 · 物理学 2007-05-23 Paul Anderson , Henrik Jeldtoft Jensen

Archean atmospheric evolution is the transition from an abiological atmosphere, to an atmosphere for which the composition and therefore climate is highly altered by life. We review the key processes and transitions in this evolution.

地球与行星天体物理 · 物理学 2024-09-23 Colin Goldblatt , Jake K. Eager-Nash , Julia E. Horne

A multispecies artificial ecosystem is formulated using cellular automata with species interactions and food chain hierarchy. The constructed finite state automaton can simulate the complexity and self-organized characteristics of the…

元胞自动机与格子气 · 物理学 2010-03-30 Xin-She Yang

The emergence of collective cooperation in competitive environments is a well-known phenomenon in biology, economics, and social systems. While most evolutionary game models focus on the evolution of strategies for a fixed game, how…

物理与社会 · 物理学 2024-08-01 Onkar Sadekar , Andrea Civilini , Jesús Gómez-Gardeñes , Vito Latora , Federico Battiston

The history of the Earth has been marked by major ecological transitions, driven by metabolic innovation, that radically reshaped the composition of the oceans and atmosphere. The nature and magnitude of the earliest transitions, hundreds…

种群与进化 · 定量生物学 2020-06-12 Boris Sauterey , Benjamin Charnay , Antonin Affholder , Stéphane Mazevet , Régis Ferrière

We study the statistics of ecosystems with a variable number of co-evolving species. The species interact in two ways: by prey-predator relationships and by direct competition with similar kinds. The interaction coefficients change slowly…

适应与自组织系统 · 物理学 2015-06-26 Michael Lassig , Ugo Bastolla , Susanna C. Manrubia , Angelo Valleriani

In contrast with animal communication systems, diversity is characteristic of almost every aspect of human language. Languages variously employ tones, clicks, or manual signs to signal differences in meaning; some languages lack the…

物理与社会 · 物理学 2013-02-14 Andrea Baronchelli , Nick Chater , Romualdo Pastor-Satorras , Morten H. Christiansen

In a wide variety of natural systems, closely-related microbial strains coexist stably, resulting in high levels of fine-scale biodiversity. However, the mechanisms that stabilize this coexistence are not fully understood. Spatial…

种群与进化 · 定量生物学 2023-03-29 Casey Barkan , Shenshen Wang

The dynamic nature of life's ability to thrive in diverse and changing planetary environments suggests that habitability and survival depend on the evolutionary path and life adaptation to environmental conditions. Here we explore such…

地球与行星天体物理 · 物理学 2024-07-04 Itay Weintraub , Hagai B. Perets

Rapidly expanding insect populations, deforestation, and global climate change threaten to destabilize key planetary carbon pools, especially the Earth's forests which link the micro-ecology of insect infestation to climate. To the extent…

种群与进化 · 定量生物学 2008-05-27 David Dunn , James P. Crutchfield

The mechanisms underlying eco-evolutionary dynamics (the feedback between ecological and evolutionary processes) are often unknown. Here, we propose that classical theory from behavioral ecology can provide a greater understanding of the…

The biological requirements for an ecosystem to develop and maintain species diversity are in general unknown. Here we consider a model ecosystem of sessile and mutually excluding organisms competing for space [Mathiesen et al. Phys. Rev.…

种群与进化 · 定量生物学 2012-09-10 Namiko Mitarai , Joachim Mathiesen , Kim Sneppen

Spatial systems with heterogeneities are ubiquitous in nature, from precipitation, temperature and soil gradients controlling vegetation growth to morphogen gradients controlling gene expression in embryos. Such systems, generally described…

动力系统 · 数学 2023-05-10 Denis D. Patterson , Simon A. Levin , A. Carla Staver , Jonathan D. Touboul

The current rate of species extinction is rapidly approaching unprecedented highs and life on Earth presently faces a sixth mass extinction event driven by anthropogenic activity, climate change and ecological collapse. The field of…

种群与进化 · 定量生物学 2022-10-12 João C Teixeira , Christian D Huber

While fields like Artificial Life have made huge strides in quantifying the mechanisms that distinguish living systems from non-living ones, particular mechanisms remain difficult to reproduce in silico. Known as open-endedness, we've been…

生物物理 · 物理学 2024-07-18 Alyssa M Adams , Eliott Jacopin , Praful Gagrani , Olaf Witkowski

Every now and then the cultural paradigm of a society changes. Human history can be regarded as a sequence of long periods of cultural stasis punctuated by paradigm shifts that transform culture upside-down over the turn of a few…

物理与社会 · 物理学 2020-06-04 Ignacio Pascual , Jacobo Aguirre , Susanna Manrubia , José A. Cuesta