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As in many other scientific domains, we face a fundamental problem when using machine learning to identify proteins from mass spectrometry data: large ground truth datasets mapping inputs to correct outputs are extremely difficult to…

A novel approach is presented for the solution of instantaneous chemical equilibrium problems. The chemical equilibrium can be considered, due to its intrinsically local character, as a mapping of the three-dimensional parameter space…

天体物理学 · 物理学 2009-11-11 A. Asensio Ramos , H. Socas-Navarro

The recent success of graph neural networks has significantly boosted molecular property prediction, advancing activities such as drug discovery. The existing deep neural network methods usually require large training dataset for each…

机器学习 · 计算机科学 2021-02-17 Zhichun Guo , Chuxu Zhang , Wenhao Yu , John Herr , Olaf Wiest , Meng Jiang , Nitesh V. Chawla

Vibrational spectroscopy is a key technique to elucidate microscopic structure and dynamics. Without the aid of theoretical approaches, it is however, often difficult to understand such spectra at a microscopic level. Ab initio molecular…

化学物理 · 物理学 2023-03-14 Philipp Schienbein

Molecular property calculations are the bedrock of chemical physics. High-fidelity \textit{ab initio} modeling techniques for computing the molecular properties can be prohibitively expensive, and motivate the development of…

Analysis of Electrochemical Impedance Spectroscopy (EIS) data for electrochemical systems often consists of defining an Equivalent Circuit Model (ECM) using expert knowledge and then optimizing the model parameters to deconvolute various…

Molecule property prediction is a fundamental problem for computer-aided drug discovery and materials science. Quantum-chemical simulations such as density functional theory (DFT) have been widely used for calculating the molecule…

机器学习 · 计算机科学 2019-11-26 Hiroyuki Shindo , Yuji Matsumoto

Deep Learning has been shown to learn efficient representations for structured data such as image, text or audio. In this chapter, we present neural network architectures that are able to learn efficient representations of molecules and…

计算物理 · 物理学 2018-12-13 Kristof T. Schütt , Alexandre Tkatchenko , Klaus-Robert Müller

Identification of charged particles in a multilayer detector by the energy loss technique may also be achieved by the use of a neural network. The performance of the network becomes worse when a large fraction of information is missing, for…

统计方法学 · 统计学 2020-04-14 S. Riggi , D. Riggi , F. Riggi

Machine Learning (ML) has the potential to accelerate discovery of new materials and shed light on useful properties of existing materials. A key difficulty when applying ML in Materials Science is that experimental datasets of material…

DNA-encoded small molecule libraries (DELs) have enabled discovery of novel inhibitors for many distinct protein targets of therapeutic value through screening of libraries with up to billions of unique small molecules. We demonstrate a new…

Machine learning offers a powerful framework for validating and predicting atomic mass. We compare three improved neural network methods for representation and extrapolation for atomic mass prediction. The powerful method, adopting a…

核理论 · 物理学 2025-03-18 Yiming Huang , Jinhui Chen , Jiangyong Jia , Lu-Meng Liu , Yu-Gang Ma , Chunjian Zhang

Graph neural networks (GNNs) demonstrate great performance in compound property and activity prediction due to their capability to efficiently learn complex molecular graph structures. However, two main limitations persist including…

生物大分子 · 定量生物学 2023-10-10 Apakorn Kengkanna , Masahito Ohue

In this study, we explore the potential of machine learning for modeling molecular electronic spectral intensities as a continuous function in a given wavelength range. Since presently available chemical space datasets provide excitation…

化学物理 · 物理学 2022-08-02 Prakriti Kayastha , Sabyasachi Chakraborty , Raghunathan Ramakrishnan

Machine learning methods and uncertainty quantification have been gaining interest throughout the last several years in low-energy nuclear physics. In particular, Gaussian processes and Bayesian Neural Networks have increasingly been…

核理论 · 物理学 2022-07-27 A. E. Lovell , A. T. Mohan , T. M. Sprouse , M. R. Mumpower

Accurate signal localization is critical for Internet of Things applications, but precise propagation models are often unavailable due to uncontrollable factors. Simplified models such as planar and spherical wavefront approximations are…

信号处理 · 电气工程与系统科学 2025-02-17 Alexandr M. Kuzminskiy , Ahmed Elzanaty , Gabriele Gradoni , Fan Wang , Rahim Tafazolli

Accurate estimation of nuclear masses and their prediction beyond the experimentally explored domains of the nuclear landscape are crucial to an understanding of the fundamental origin of nuclear properties and to many applications of…

核理论 · 物理学 2023-05-09 Babette Dellen , Uwe Jaekel , Paulo S. A. Freitas , John W. Clark

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

数据分析、统计与概率 · 物理学 2007-06-21 M. E. J. Newman , E. A. Leicht

Metabolomics complements investigation of the genome, transcriptome, and proteome of an organism. Today, the vast majority of metabolites remain unknown, in particular for non-model organisms. Mass spectrometry is one of the predominant…

定量方法 · 定量生物学 2013-07-31 Kai Dührkop , Marcus Ludwig , Marvin Meusel , Sebastian Böcker

Machine-learning models in chemistry - when based on descriptors of atoms embedded within molecules - face essential challenges in transferring the quality of predictions of local electronic structures and their associated properties across…

化学物理 · 物理学 2024-09-27 Frederik Ø. Kjeldal , Janus J. Eriksen