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Protein activity is a significant characteristic for recombinant proteins which can be used as biocatalysts. High activity of proteins reduces the cost of biocatalysts. A model that can predict protein activity from amino acid sequence is…

定量方法 · 定量生物学 2018-07-23 X. Han , X. Wang , K. Zhou

Deep learning (DL) models have gained prominence in domains such as computer vision and natural language processing but remain underutilized for regression tasks involving tabular data. In these cases, traditional machine learning (ML)…

机器学习 · 计算机科学 2025-01-08 Assaf Shmuel , Oren Glickman , Teddy Lazebnik

Protein classification tasks are essential in drug discovery. Real-world protein structures are dynamic, which will determine the properties of proteins. However, the existing machine learning methods, like ProNet (Wang et al., 2022a), only…

定量方法 · 定量生物学 2024-03-27 Yi-Shan Lan , Pin-Yu Chen , Tsung-Yi Ho

The success of deep learning depends heavily on the availability of large datasets, but in robotic manipulation there are many learning problems for which such datasets do not exist. Collecting these datasets is time-consuming and…

机器人学 · 计算机科学 2022-07-21 Peter Mitrano , Dmitry Berenson

Deep artificial neural networks require a large corpus of training data in order to effectively learn, where collection of such training data is often expensive and laborious. Data augmentation overcomes this issue by artificially inflating…

机器学习 · 计算机科学 2017-08-22 Luke Taylor , Geoff Nitschke

Quantitative measurements produced by mass spectrometry proteomics experiments offer a direct way to explore the role of proteins in molecular mechanisms. However, analysis of such data is challenging due to the large proportion of missing…

统计方法学 · 统计学 2025-01-22 Haeun Moon , Jin-Hong Du , Jing Lei , Kathryn Roeder

Data augmentation is essential when applying Machine Learning in small-data regimes. It generates new samples following the observed data distribution while increasing their diversity and variability to help researchers and practitioners…

机器学习 · 计算机科学 2023-04-10 Audrey Poinsot , Alessandro Leite

Data augmentation is an essential part of the training process applied to deep learning models. The motivation is that a robust training process for deep learning models depends on large annotated datasets, which are expensive to be…

计算机视觉与模式识别 · 计算机科学 2017-10-31 Toan Tran , Trung Pham , Gustavo Carneiro , Lyle Palmer , Ian Reid

Deep learning approaches deliver state-of-the-art performance in recognition of spatiotemporal human motion data. However, one of the main challenges in these recognition tasks is limited available training data. Insufficient training data…

计算机视觉与模式识别 · 计算机科学 2023-08-14 Junxiao Shen , John Dudley , Per Ola Kristensson

As more and more artificial intelligence (AI) technologies move from the laboratory to real-world applications, the open-set and robustness challenges brought by data from the real world have received increasing attention. Data augmentation…

机器学习 · 计算机科学 2022-12-09 Zhendong Liu , Wenyu Jiang , Min guo , Chongjun Wang

Augmentation is an effective alternative to utilize the small amount of labeled protein data. However, most of the existing work focuses on design-ing new architectures or pre-training tasks, and relatively little work has studied data…

定量方法 · 定量生物学 2024-03-05 Rui Sun , Lirong Wu , Haitao Lin , Yufei Huang , Stan Z. Li

Predicting accurate protein-ligand binding affinity is important in drug discovery but remains a challenge even with computationally expensive biophysics-based energy scoring methods and state-of-the-art deep learning approaches. Despite…

We introduce the Differentiable Weightless Neural Network (DWN), a model based on interconnected lookup tables. Training of DWNs is enabled by a novel Extended Finite Difference technique for approximate differentiation of binary values. We…

Data augmentation is a popular technique which helps improve generalization capabilities of deep neural networks. It plays a pivotal role in remote-sensing scenarios in which the amount of high-quality ground truth data is limited, and…

计算机视觉与模式识别 · 计算机科学 2019-03-14 Jakub Nalepa , Michal Myller , Michal Kawulok

Deep neural networks have emerged as very successful tools for image restoration and reconstruction tasks. These networks are often trained end-to-end to directly reconstruct an image from a noisy or corrupted measurement of that image. To…

图像与视频处理 · 电气工程与系统科学 2021-06-30 Zalan Fabian , Reinhard Heckel , Mahdi Soltanolkotabi

Deep Neural Networks (DNNs) show a significant impact on medical imaging. One significant problem with adopting DNNs for skin cancer classification is that the class frequencies in the existing datasets are imbalanced. This problem hinders…

图像与视频处理 · 电气工程与系统科学 2019-10-29 Ibrahim Saad Ali , Mamdouh Farouk Mohamed , Yousef Bassyouni Mahdy

Deep learning has performed remarkably well on many tasks recently. However, the superior performance of deep models relies heavily on the availability of a large number of training data, which limits the wide adaptation of deep models on…

机器学习 · 计算机科学 2022-10-14 Huiyuan Yang , Han Yu , Akane Sano

Understanding protein solubility is essential for their functional applications. Computational methods for predicting protein solubility are crucial for reducing experimental costs and enhancing the efficiency and success rates of protein…

定量方法 · 定量生物学 2024-07-01 Yang Tan , Jia Zheng , Liang Hong , Bingxin Zhou

In this work, we consider the problem of imbalanced data in a regression framework when the imbalanced phenomenon concerns continuous or discrete covariates. Such a situation can lead to biases in the estimates. In this case, we propose a…

机器学习 · 统计学 2023-02-21 Samuel Stocksieker , Denys Pommeret , Arthur Charpentier

High-fidelity full-field micro-mechanical modeling of the non-linear path-dependent materials demands a substantial computational effort. Recent trends in the field incorporates data-driven Artificial Neural Networks (ANNs) as surrogate…

材料科学 · 物理学 2023-11-27 Hon Lam Cheung , Petter Uvdal , Mohsen Mirkhalaf
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