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In this study, we proposed and validated a multi-atlas guided 3D fully convolutional network (FCN) ensemble model (M-FCN) for segmenting brain regions of interest (ROIs) from structural magnetic resonance images (MRIs). One major limitation…

计算机视觉与模式识别 · 计算机科学 2023-08-11 Jiong Wu , Xiaoying Tang

Recent advancements in medical image segmentation techniques have achieved compelling results. However, most of the widely used approaches do not take into account any prior knowledge about the shape of the biomedical structures being…

图像与视频处理 · 电气工程与系统科学 2019-09-18 Zhou He , Siqi Bao , Albert Chung

Non-invasive detection of cardiovascular disorders from radiology scans requires quantitative image analysis of the heart and its substructures. There are well-established measurements that radiologists use for diseases assessment such as…

机器学习 · 统计学 2017-08-04 Aliasghar Mortazi , Jeremy Burt , Ulas Bagci

Deep learning algorithms, in particular 2D and 3D fully convolutional neural networks (FCNs), have rapidly become the mainstream methodology for volumetric medical image segmentation. However, 2D convolutions cannot fully leverage the rich…

图像与视频处理 · 电气工程与系统科学 2019-08-06 Zhuotun Zhu , Chenxi Liu , Dong Yang , Alan Yuille , Daguang Xu

Recent advances in deep learning, like 3D fully convolutional networks (FCNs), have improved the state-of-the-art in dense semantic segmentation of medical images. However, most network architectures require severely downsampling or…

计算机视觉与模式识别 · 计算机科学 2018-06-07 Holger R. Roth , Chen Shen , Hirohisa Oda , Takaaki Sugino , Masahiro Oda , Yuichiro Hayashi , Kazunari Misawa , Kensaku Mori

Deep fully convolutional neural network (FCN) based architectures have shown great potential in medical image segmentation. However, such architectures usually have millions of parameters and inadequate number of training samples leading to…

计算机视觉与模式识别 · 计算机科学 2018-01-17 Mahendra Khened , Varghese Alex Kollerathu , Ganapathy Krishnamurthi

We present a novel automated method to segment the myocardium of both left and right ventricles in MRI volumes. The segmentation is consistent in 3D across the slices such that it can be directly used for mesh generation. Two specific…

计算机视觉与模式识别 · 计算机科学 2018-03-30 Qiao Zheng , Hervé Delingette , Nicolas Duchateau , Nicholas Ayache

The segmentation of the left ventricle (LV) from CINE MRI images is essential to infer important clinical parameters. Typically, machine learning algorithms for automated LV segmentation use annotated contours from only two cardiac phases,…

计算机视觉与模式识别 · 计算机科学 2018-09-05 Nicoló Savioli , Miguel Silva Vieira , Pablo Lamata , Giovanni Montana

Segmentation is a critical step in medical image analysis. Fully Convolutional Networks (FCNs) have emerged as powerful segmentation models achieving state-of-the-art results in various medical image datasets. Network architectures are…

图像与视频处理 · 电气工程与系统科学 2019-07-29 Maria G. Baldeon Calisto , Susana K. Lai-Yuen

Medical image segmentation is one of the important tasks of computer-aided diagnosis in medical image analysis. Since most medical images have the characteristics of blurred boundaries and uneven intensity distribution, through existing…

计算机视觉与模式识别 · 计算机科学 2021-06-09 Sixing Yin , Yameng Han , Shufang Li

Semantic segmentation using convolutional neural networks (CNNs) is the state-of-the-art for many medical image segmentation tasks including myocardial segmentation in cardiac MR images. However, the predicted segmentation maps obtained…

图像与视频处理 · 电气工程与系统科学 2022-08-18 Sofie Tilborghs , Jan Bogaert , Frederik Maes

Convolutional neural networks (CNNs) have achieved state-of-the-art performance for automatic medical image segmentation. However, they have not demonstrated sufficiently accurate and robust results for clinical use. In addition, they are…

In cardiac magnetic resonance imaging, fully-automatic segmentation of the heart enables precise structural and functional measurements to be taken, e.g. from short-axis MR images of the left-ventricle. In this work we propose a recurrent…

机器学习 · 统计学 2016-08-16 Rudra P K Poudel , Pablo Lamata , Giovanni Montana

One of the most common tasks in medical imaging is semantic segmentation. Achieving this segmentation automatically has been an active area of research, but the task has been proven very challenging due to the large variation of anatomy…

计算机视觉与模式识别 · 计算机科学 2018-04-10 Holger R. Roth , Chen Shen , Hirohisa Oda , Masahiro Oda , Yuichiro Hayashi , Kazunari Misawa , Kensaku Mori

In this paper, we adopt 3D Convolutional Neural Networks to segment volumetric medical images. Although deep neural networks have been proven to be very effective on many 2D vision tasks, it is still challenging to apply them to 3D tasks…

计算机视觉与模式识别 · 计算机科学 2018-08-03 Zhuotun Zhu , Yingda Xia , Wei Shen , Elliot K. Fishman , Alan L. Yuille

This paper presents a fully automated atlas-based pancreas segmentation method from CT volumes utilizing 3D fully convolutional network (FCN) feature-based pancreas localization. Segmentation of the pancreas is difficult because it has…

Automated segmentation of individual calf muscle compartments from 3D magnetic resonance (MR) images is essential for developing quantitative biomarkers for muscular disease progression and its prediction. Achieving clinically acceptable…

图像与视频处理 · 电气工程与系统科学 2020-12-23 Zhihui Guo , Honghai Zhang , Zhi Chen , Ellen van der Plas , Laurie Gutmann , Daniel Thedens , Peggy Nopoulos , Milan Sonka

In this paper we propose a deep learning approach for segmenting sub-cortical structures of the human brain in Magnetic Resonance (MR) image data. We draw inspiration from a state-of-the-art Fully-Convolutional Neural Network (F-CNN)…

计算机视觉与模式识别 · 计算机科学 2016-02-08 Mahsa Shakeri , Stavros Tsogkas , Enzo Ferrante , Sarah Lippe , Samuel Kadoury , Nikos Paragios , Iasonas Kokkinos

We propose a method based on deep learning to perform cardiac segmentation on short axis MRI image stacks iteratively from the top slice (around the base) to the bottom slice (around the apex). At each iteration, a novel variant of U-net is…

计算机视觉与模式识别 · 计算机科学 2018-04-26 Qiao Zheng , Hervé Delingette , Nicolas Duchateau , Nicholas Ayache

Atrial Fibrillation (AF) is a common electro-physiological cardiac disorder that causes changes in the anatomy of the atria. A better characterization of these changes is desirable for the definition of clinical biomarkers, furthermore,…

机器学习 · 统计学 2018-09-28 Nicoló Savioli , Giovanni Montana , Pablo Lamata