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We apply a temporal edge prediction model for weighted dynamic graphs to predict time-dependent changes in molecular structure. Each molecule is represented as a complete graph in which each atom is a vertex and all vertex pairs are…

机器学习 · 计算机科学 2021-06-28 Michael Hunter Ashby , Jenna A. Bilbrey

Machine learning plays an increasingly important role in many areas of chemistry and materials science, e.g. to predict materials properties, to accelerate simulations, to design new materials, and to predict synthesis routes of new…

Machine learning frameworks such as graph neural networks typically rely on a given, fixed graph to exploit relational inductive biases and thus effectively learn from network data. However, when said graphs are (partially) unobserved,…

机器学习 · 计算机科学 2022-05-20 Max Wasserman , Saurabh Sihag , Gonzalo Mateos , Alejandro Ribeiro

Pattern recognition problems in high energy physics are notably different from traditional machine learning applications in computer vision. Reconstruction algorithms identify and measure the kinematic properties of particles produced in…

The performance of an organic photovoltaic device is intricately connected to its active layer morphology. This connection between the active layer and device performance is very expensive to evaluate, either experimentally or…

Traffic forecasting plays a crucial role in intelligent transportation systems. The spatial-temporal complexities in transportation networks make the problem especially challenging. The recently suggested deep learning models share basic…

机器学习 · 计算机科学 2022-03-23 Yuyol Shin , Yoonjin Yoon

Recently, graph neural networks (GNNs) have been successfully applied to predicting molecular properties, which is one of the most classical cheminformatics tasks with various applications. Despite their effectiveness, we empirically…

机器学习 · 计算机科学 2023-03-14 Su Kim , Dongha Lee , SeongKu Kang , Seonghyeon Lee , Hwanjo Yu

The success of machine learning (ML) in materials property prediction depends heavily on how the materials are represented for learning. Two dominant families of material descriptors exist, one that encodes crystal structure in the…

机器学习 · 计算机科学 2022-04-05 Achintha Ihalage , Yang Hao

The recent development of high-throughput sequencing creates a large collection of multi-omics data, which enables researchers to better investigate cancer molecular profiles and cancer taxonomy based on molecular subtypes. Integrating…

基因组学 · 定量生物学 2024-01-25 Bingjun Li , Sheida Nabavi

To deepen our understanding of graph neural networks, we investigate the representation power of Graph Convolutional Networks (GCN) through the looking glass of graph moments, a key property of graph topology encoding path of various…

机器学习 · 计算机科学 2019-11-04 Nima Dehmamy , Albert-László Barabási , Rose Yu

In drug discovery, knowledge of the graph structure of chemical compounds is essential. Many thousands of scientific articles in chemistry and pharmaceutical sciences have investigated chemical compounds, but in cases the details of the…

机器学习 · 统计学 2020-09-16 Martijn Oldenhof , Adam Arany , Yves Moreau , Jaak Simm

Clustering is a fundamental task in data analysis. Recently, deep clustering, which derives inspiration primarily from deep learning approaches, achieves state-of-the-art performance and has attracted considerable attention. Current deep…

机器学习 · 计算机科学 2020-02-13 Deyu Bo , Xiao Wang , Chuan Shi , Meiqi Zhu , Emiao Lu , Peng Cui

Structural damage detection has become an interdisciplinary area of interest for various engineering fields, while the available damage detection methods are being in the process of adapting machine learning concepts. Most machine learning…

信号处理 · 电气工程与系统科学 2020-06-02 Jianxi Yang , Likai Zhang , Cen Chen , Yangfan Li , Ren Li , Guiping Wang , Shixin Jiang , Zeng Zeng

The prediction of physicochemical properties from molecular structures is a crucial task for artificial intelligence aided molecular design. A growing number of Graph Neural Networks (GNNs) have been proposed to address this challenge.…

机器学习 · 计算机科学 2020-11-17 Shuo Zhang , Yang Liu , Lei Xie

Although deep neural networks generally have fixed network structures, the concept of dynamic mechanism has drawn more and more attention in recent years. Attention mechanisms compute input-dependent dynamic attention weights for…

机器学习 · 计算机科学 2019-12-03 Lanqing Xue , Xiaopeng Li , Nevin L. Zhang

With the increased penetration of wind energy into the power grid, it has become increasingly important to be able to predict the expected power production for larger wind farms. Deep learning (DL) models can learn complex patterns in the…

机器学习 · 计算机科学 2022-06-07 Lars Ødegaard Bentsen , Narada Dilp Warakagoda , Roy Stenbro , Paal Engelstad

Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher-order…

化学物理 · 物理学 2023-12-22 Junwu Chen , Philippe Schwaller

Probabilistic generative deep learning for molecular design involves the discovery and design of new molecules and analysis of their structure, properties and activities by probabilistic generative models using the deep learning approach.…

机器学习 · 计算机科学 2019-02-15 Daniel T. Chang

This paper presents new designs of graph convolutional neural networks (GCNs) on 3D meshes for 3D object segmentation and classification. We use the faces of the mesh as basic processing units and represent a 3D mesh as a graph where each…

计算机视觉与模式识别 · 计算机科学 2021-07-01 Wenming Tang Guoping Qiu

The process of design and discovery of new materials can be significantly expedited and simplified if we can learn effectively from available data. Deep learning (DL) approaches have recently received a lot of interest for their ability to…