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Cryo-electron tomography (cryo-ET) provides direct 3D visualization of macromolecules inside the cell, enabling analysis of their in situ morphology. This morphology can be regarded as an SE(3)-invariant, denoised volumetric representation…

计算机视觉与模式识别 · 计算机科学 2026-01-06 Mostofa Rafid Uddin , Mahek Vora , Qifeng Wu , Muyuan Chen , Min Xu

Multi-view evidential learning aims to integrate information from multiple views to improve prediction performance and provide trustworthy uncertainty esitimation. Most previous methods assume that view-specific evidence learning is…

机器学习 · 计算机科学 2025-11-11 Haishun Chen , Cai Xu , Jinlong Yu , Yilin Zhang , Ziyu Guan , Wei Zhao , Fangyuan Zhao , Xin Yang

Multi-instance learning is common for computer vision tasks, especially in biomedical image processing. Traditional methods for multi-instance learning focus on designing feature aggregation methods and multi-instance classifiers, where the…

计算机视觉与模式识别 · 计算机科学 2021-03-18 Yanlun Tu , Houchao Lei , Wei Long , Yang Yang

Objective: Fast neural Electrical Impedance Tomography (EIT) is a method which permits imaging of neuronal activity in nerves by measuring the associated impedance changes (dZ). Due to the small magnitudes of dZ signals, EIT parameters…

医学物理 · 物理学 2019-10-17 Ilya Tarotin , Kirill Aristovich , David Holder

This work presents a practical finite element modeling strategy, the Crack Element Method (CEM), for simulating the dynamic crack propagation in two-dimensional structures. The method employs an element-splitting algorithm based on the…

计算工程、金融与科学 · 计算机科学 2025-08-04 Yuxi Xie , Ethan J. Wu , Lu Xu , Jimmy Perez , Shaofan Li

Cryo-electron microscopy (Cryo-EM) enables high-resolution imaging of biomolecules, but structural heterogeneity remains a major challenge in 3D reconstruction. Traditional methods assume a discrete set of conformations, limiting their…

机器学习 · 统计学 2025-09-09 Diego Sanchez Espinosa , Erik H Thiede , Yunan Yang

Deep fully convolutional neural network (FCN) based architectures have shown great potential in medical image segmentation. However, such architectures usually have millions of parameters and inadequate number of training samples leading to…

计算机视觉与模式识别 · 计算机科学 2018-01-17 Mahendra Khened , Varghese Alex Kollerathu , Ganapathy Krishnamurthi

The embedded atom method (EAM) is one of the most widely used many-body, short-range potentials in molecular dynamics simulations, particularly for metallic systems. To enhance the efficiency of calculating these short-range interactions,…

材料科学 · 物理学 2025-03-25 Jieqiong Zhang , Jizu Huang , Zihao Yang

We derive a Fast Multipole Method (FMM) where a low-rank approximation of the kernel is obtained using the Empirical Interpolation Method (EIM). Contrary to classical interpolation-based FMM, where the interpolation points and basis are…

数值分析 · 数学 2015-08-25 Fabien Casenave

A common task in cryo-electron microscopy (cryo-EM) data processing is to compare three-dimensional density maps of macromolecules. In this paper, we propose an algorithm for aligning three-dimensional density maps that exploits common…

图像与视频处理 · 电气工程与系统科学 2023-02-27 Yael Harpaz , Yoel Shkolnisky

Sepsis is a life threatening medical condition that occurs when the body has an extreme response to infection, leading to widespread inflammation, organ failure, and potentially death. Because sepsis can worsen rapidly, early detection is…

机器学习 · 计算机科学 2025-05-07 Oyindolapo O. Komolafe , Zhimin Mei , David Morales Zarate , Gregory William Spangenberg

Extreme learning machine (ELM) is an extremely fast learning method and has a powerful performance for pattern recognition tasks proven by enormous researches and engineers. However, its good generalization ability is built on large numbers…

机器学习 · 计算机科学 2015-02-05 Wentao Zhu , Jun Miao , Laiyun Qing

We have developed an automatic method for segmenting fluorescence lifetime (FLT) imaging microscopy (FLIM) images of cells inspired by a multi-resolution community detection (MCD) based network segmentation method. The image processing…

医学物理 · 物理学 2014-01-06 Dandan Hu , Pinaki Sarder , Peter Ronhovde , Sandra Orthaus , Samuel Achilefu , Zohar Nussinov

Continual learning (CL) aims to extend deep models from static and enclosed environments to dynamic and complex scenarios, enabling systems to continuously acquire new knowledge of novel categories without forgetting previously learned…

计算机视觉与模式识别 · 计算机科学 2024-05-21 Sunyuan Qiang , Xuxin Lin , Yanyan Liang , Jun Wan , Du Zhang

Accurate cancer survival prediction requires integration of diverse data modalities that reflect the complex interplay between imaging, clinical parameters, and textual reports. However, existing multimodal approaches suffer from simplistic…

机器学习 · 计算机科学 2025-07-01 Aakash Tripathi , Asim Waqas , Matthew B. Schabath , Yasin Yilmaz , Ghulam Rasool

Cryogenic electron microscopy (cryo-EM) has transformed structural biology by allowing to reconstruct 3D biomolecular structures up to near-atomic resolution. However, the 3D reconstruction process remains challenging, as the 3D structures…

计算机视觉与模式识别 · 计算机科学 2023-07-18 Bongjin Koo , Julien Martel , Ariana Peck , Axel Levy , Frédéric Poitevin , Nina Miolane

Cryo-electron microscopy (cryo-EM) has become a major experimental technique to determine the structures of large protein complexes and molecular assemblies, as evidenced by the 2017 Nobel Prize. Although cryo-EM has been drastically…

生物大分子 · 定量生物学 2021-06-01 Dong Si , Andrew Nakamura , Runbang Tang , Haowen Guan , Jie Hou , Ammaar Firozi , Renzhi Cao , Kyle Hippe , Minglei Zhao

Strong multiple scattering of the probe in scanning transmission electron microscopy (STEM) means image simulations are usually required for quantitative interpretation and analysis of elemental maps produced by electron energy-loss…

材料科学 · 物理学 2019-12-25 Hamish G. Brown , Jim Ciston , Colin Ophus

We present an optimisation method for the assignment of photometric galaxies into a chosen set of redshift bins. This is achieved by combining simulated annealing, an optimisation algorithm inspired by solid-state physics, with an…

宇宙学与河外天体物理 · 物理学 2023-02-08 Benjamin Stölzner , Benjamin Joachimi , Andreas Korn , the LSST Dark Energy Science Collaboration

Positron emission tomographs (PET) do not measure an image directly. Instead, they measure at the boundary of the field-of-view (FOV) of PET tomograph a sinogram that consists of measurements of the sums of all the counts along the lines…