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The analysis of biological networks is characterized by the definition of precise linear constraints used to cumulatively reduce the solution space of the computed states of a multi-omic (for instance metabolic, transcriptomic and…

分子网络 · 定量生物学 2018-10-15 Vandan Parmar , Pietro Lio

It has been recognized that many complex dynamical systems in the real world require a description in terms of multiplex networks, where a set of common, mutually connected nodes belong to distinct network layers and play a different role…

物理与社会 · 物理学 2019-12-23 Chuang Ma , Han-Shuang Chen , Xiang Li , Ying-Cheng Lai , Hai-Feng Zhang

Large-scale human social network structure is typically inferred from digital trace samples of online social media platforms or mobile communication data. Instead, here we investigate the social network structure of a complete population,…

物理与社会 · 物理学 2022-11-29 Eszter Bokányi , Eelke M. Heemskerk , Frank W. Takes

Many recent developments in network analysis have focused on multilayer networks, which one can use to encode time-dependent interactions, multiple types of interactions, and other complications that arise in complex systems. Like their…

社会与信息网络 · 计算机科学 2021-01-04 A. Roxana Pamfil , Sam D. Howison , Mason A. Porter

Multilayer networks are a useful way to capture and model multiple, binary or weighted relationships among a fixed group of objects. While community detection has proven to be a useful exploratory technique for the analysis of single-layer…

社会与信息网络 · 计算机科学 2017-11-09 James D. Wilson , John Palowitch , Shankar Bhamidi , Andrew B. Nobel

The study of complex networks that account for different types of interactions has become a subject of interest in the last few years, specially because its representational power in the description of users interactions in diverse online…

物理与社会 · 物理学 2015-09-17 Albert Solé-Ribalta , Clara Granell , Sergio Gómez , Alex Arenas

Networks are convenient mathematical models to represent the structure of complex systems, from cells to societies. In the past decade, multilayer network science -- the branch of the field dealing with units interacting in multiple…

In the past years, network theory has successfully characterized the interaction among the constituents of a variety of complex systems, ranging from biological to technological, and social systems. However, up until recently, attention was…

Understanding how different networks relate to each other is key for obtaining a greater insight into complex systems. Here, we introduce an intuitive yet powerful framework to characterise the relationship between two networks comprising…

社会与信息网络 · 计算机科学 2023-08-09 Andrea I. Luppi , Eckehard Olbrich , Conor Finn , Laura E. Suárez , Fernando E. Rosas , Pedro A. M. Mediano , Jürgen Jost

We propose two methods for the unsupervised detection of communities in undirected multiplex networks. These networks consist of multiple layers that record different relationships between the same entities or incorporate data from…

数值分析 · 数学 2024-12-04 Kai Bergermann , Martin Stoll

Multilayer networks represent systems in which there are several topological levels each one representing one kind of interaction or interdependency between the systems' elements. These networks have attracted a lot of attention recently…

物理与社会 · 物理学 2015-04-22 Emanuele Cozzo , Guilherme Ferraz de Arruda , Francisco A. Rodrigues , Yamir Moreno

Many real-world networks, including nervous systems, exhibit meso-scale structure. This means that their elements can be grouped into meaningful sub-networks. In general, these sub-networks are unknown ahead of time and must be "discovered"…

神经元与认知 · 定量生物学 2020-11-16 Richard F. Betzel

Given the ubiquity of modularity in biological systems, module-level regulation analysis is vital for understanding biological systems across various levels and their dynamics. Current statistical analysis on biological modules…

统计方法学 · 统计学 2025-03-24 Yaoming Zhen , Jin-Hong Du

We introduce a methodology based on averaging similarity matrices with the aim of integrating the layers of a multiplex network into a single monoplex network. Multiplex networks are adopted for modelling a wide variety of real-world…

物理与社会 · 物理学 2025-04-30 Federica Baccini , Lucio Barabesi , Eugenio Petrovich

The choice of structural resolution is a fundamental aspect of protein modelling, determining the balance between descriptive power and interpretability. Although atomistic simulations provide maximal detail, much of this information is…

生物大分子 · 定量生物学 2025-10-23 Margherita Mele , Raffaele Fiorentini , Thomas Tarenzi , Giovanni Mattiotti , Raffaello Potestio

This paper presents a novel approach to estimating community membership probabilities for network vertices generated by the Degree Corrected Mixed Membership Stochastic Block Model while preserving individual edge privacy. Operating within…

统计方法学 · 统计学 2025-11-26 Abhinav Chakraborty , Sayak Chatterjee , Sagnik Nandy

Recent developments in complex systems have witnessed that many real-world scenarios, successfully represented as networks are not always restricted to binary interactions but often include higher-order interactions among the nodes. These…

适应与自组织系统 · 物理学 2022-04-22 Md Sayeed Anwar , Dibakar Ghosh

Complex networks provide a powerful mathematical representation of complex systems in nature and society. To understand complex networks, it is crucial to explore their internal structures, also called structural regularities. The task of…

社会与信息网络 · 计算机科学 2015-12-02 Yi Chen , Xiao-long Wang , Xin Xiang , Bu-zhou Tang , Qing-cai Chen , Bo Yuan , Jun-zhao Bu

The human organism is an integrated network where complex physiologic systems, each with its own regulatory mechanisms, continuously interact, and where failure of one system can trigger a breakdown of the entire network. Identifying and…

数据分析、统计与概率 · 物理学 2012-03-02 Amir Bashan , Ronny P. Bartsch , Jan W. Kantelhardt , Shlomo Havlin , Plamen Ch. Ivanov

The community structure of a complex network can be determined by finding the partitioning of its nodes that maximizes modularity. Many of the proposed algorithms for doing this work by recursively bisecting the network. We show that this…

计算机与社会 · 计算机科学 2015-05-13 Yudong Sun , Bogdan Danila , Kresimir Josic , Kevin E. Bassler