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Graphical models are widely used to study biological networks. Interventions on network nodes are an important feature of many experimental designs for the study of biological networks. In this paper we put forward a causal variant of…

统计方法学 · 统计学 2015-06-17 Simon E. F. Spencer , Steven M. Hill , Sach Mukherjee

We study the stable attractors of a class of continuous dynamical systems that may be idealized as networks of Boolean elements, with the goal of determining which Boolean attractors, if any, are good approximations of the attractors of…

分子网络 · 定量生物学 2009-11-13 Johannes Norrell , Björn Samuelsson , Joshua E. S. Socolar

This paper considers the distributed consensus problem of multi-agent systems with general continuous-time linear dynamics. Two distributed adaptive dynamic consensus protocols are proposed, based on the relative output information of…

系统与控制 · 计算机科学 2015-01-20 Zhongkui Li , Xiangdong Liu , Wei Ren , Lihua Xie

Diagrams often depict complex phenomena and serve as a good test bed for visual and textual reasoning. However, understanding diagrams using natural image understanding approaches requires large training datasets of diagrams, which are very…

计算机视觉与模式识别 · 计算机科学 2018-04-05 Jonghyun Choi , Jayant Krishnamurthy , Aniruddha Kembhavi , Ali Farhadi

Random Boolean networks, originally invented as models of genetic regulatory networks, are simple models for a broad class of complex systems that show rich dynamical structures. From a biological perspective, the most interesting networks…

无序系统与神经网络 · 物理学 2009-11-07 Joshua E. S. Socolar , Stuart A. Kauffman

Learning multi-agent system dynamics has been extensively studied for various real-world applications, such as molecular dynamics in biology. Most of the existing models are built to learn single system dynamics from observed historical…

机器学习 · 计算机科学 2023-07-11 Zijie Huang , Yizhou Sun , Wei Wang

We study experimentally the synchronization patterns in time-delayed directed Boolean networks of excitable systems. We observe a transition in the network dynamics when the refractory time of the individual systems is adjusted. When the…

适应与自组织系统 · 物理学 2013-03-07 David P. Rosin , Damien Rontani , Daniel J. Gauthier , Eckehard Schöll

Data-driven methods for the identification of the governing equations of dynamical systems or the computation of reduced surrogate models play an increasingly important role in many application areas such as physics, chemistry, biology, and…

动力系统 · 数学 2024-12-17 Stefan Klus , Hongyu Zhu

The observed long-range spatiotemporal correlations of real world dynamical systems is governed by quantumlike mechanics with inherent non-local connections. In summary, microscopic scale local fluctuations form a unified self-organized…

综合物理 · 物理学 2007-05-23 A. Mary Selvam

A network provides powerful means of representing complex relationships between entities by abstracting entities as vertices, and relationships as edges connecting vertices in a graph. Beyond the presence or absence of relationships, a…

社会与信息网络 · 计算机科学 2020-01-15 Isuru Udayangani Hewapathirana

Dynamic connectivity is a well-studied problem, but so far the most compelling progress has been confined to the edge-update model: maintain an understanding of connectivity in an undirected graph, subject to edge insertions and deletions.…

数据结构与算法 · 计算机科学 2008-08-11 Timothy M. Chan , Mihai Patrascu , Liam Roditty

In distributed networks, it is often useful for the nodes to be aware of dense subgraphs, e.g., such a dense subgraph could reveal dense subtructures in otherwise sparse graphs (e.g. the World Wide Web or social networks); these might…

分布式、并行与集群计算 · 计算机科学 2012-08-08 Atish Das Sarma , Ashwin Lall , Danupon Nanongkai , Amitabh Trehan

Controlling a robot based on physics-consistent dynamic models, such as Deep Lagrangian Networks (DeLaN), can improve the generalizability and interpretability of the resulting behavior. However, in complex environments, the number of…

机器人学 · 计算机科学 2025-07-29 Lucas Schulze , Jan Peters , Oleg Arenz

Many natural systems are organized as networks, in which the nodes (be they cells, individuals or populations) interact in a time-dependent fashion. The dynamic behavior of these networks depends on how these nodes are connected, which can…

神经元与认知 · 定量生物学 2015-06-22 Anca Radulescu , Sergio Verduzco-Flores

This paper builds on the connection between graph neural networks and traditional dynamical systems. We propose continuous graph neural networks (CGNN), which generalise existing graph neural networks with discrete dynamics in that they can…

机器学习 · 计算机科学 2020-07-17 Louis-Pascal A. C. Xhonneux , Meng Qu , Jian Tang

A current challenge for data management systems is to support the construction and maintenance of machine learning models over data that is large, multi-dimensional, and evolving. While systems that could support these tasks are emerging,…

人工智能 · 计算机科学 2017-10-06 Yu Zhang , Srikanta Tirthapura , Graham Cormode

We propose the use of Deterministic Generalized Asynchronous Random Boolean Networks [Gershenson, 2002] as models of contextual deterministic discrete dynamical systems. We show that changes in the context have drastic effects on the global…

适应与自组织系统 · 物理学 2007-05-23 Carlos Gershenson , Jan Broekaert , Diederik Aerts

Modeling multivariate time series has long been a subject that has attracted researchers from a diverse range of fields including economics, finance, and traffic. A basic assumption behind multivariate time series forecasting is that its…

机器学习 · 计算机科学 2020-05-26 Zonghan Wu , Shirui Pan , Guodong Long , Jing Jiang , Xiaojun Chang , Chengqi Zhang

This chapter overviews a recently introduced network-based model of combinatorial landscapes: Local Optima Networks (LON). The model compresses the information given by the whole search space into a smaller mathematical object that is a…

神经与进化计算 · 计算机科学 2014-02-13 Gabriela Ochoa , Sébastien Verel , Fabio Daolio , Marco Tomassini

A nonparametric Bayesian sparse graph linear dynamical system (SGLDS) is proposed to model sequentially observed multivariate data. SGLDS uses the Bernoulli-Poisson link together with a gamma process to generate an infinite dimensional…

机器学习 · 统计学 2018-02-22 Rahi Kalantari , Joydeep Ghosh , Mingyuan Zhou
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