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Understanding the mechanisms of neural communication in large-scale brain networks remains a major goal in neuroscience. We investigated whether navigation is a parsimonious routing model for connectomics. Navigating a network involves…

神经元与认知 · 定量生物学 2018-06-05 Caio Seguin , Martijn P. van den Heuvel , Andrew Zalesky

The architecture of the human connectome supports efficient communication protocols relying either on distances between brain regions or on the intensities of connections. However, none of these protocols combines information about the two…

神经元与认知 · 定量生物学 2024-10-07 Laia Barjuan , Jordi Soriano , M. Ángeles Serrano

Finding suitable embeddings for connectomes (spatially embedded complex networks that map neural connections in the brain) is crucial for analyzing and understanding cognitive processes. Recent studies have found two-dimensional hyperbolic…

神经元与认知 · 定量生物学 2024-07-24 Dorota Celińska-Kopczyńska , Eryk Kopczyński

The connectome, a map of the structural and/or functional connections in the brain, provides a complex representation of the neurobiological phenotypes on which it supervenes. This information-rich data modality has the potential to…

High-throughput methods for yielding the set of connections in a neural system, the connectome, are now being developed. This tutorial describes ways to analyze the topological and spatial organization of the connectome at the macroscopic…

神经元与认知 · 定量生物学 2011-12-23 Marcus Kaiser

Information routing is one of the main tasks in many complex networks with a communication function. Maps produced by embedding the networks in hyperbolic space can assist this task enabling the implementation of efficient navigation…

物理与社会 · 物理学 2017-09-11 Elisenda Ortiz , Michele Starnini , M. Ángeles Serrano

Volumetric brain reconstructions provide an unprecedented opportunity to gain insights into the complex connectivity patterns of neurons in an increasing number of organisms. Here, we model and quantify the complexity of the resulting…

神经元与认知 · 定量生物学 2024-05-13 Anastasiya Salova , István A. Kovács

Human proximity networks are temporal networks representing the close-range proximity among humans in a physical space. They have been extensively studied in the past 15 years as they are critical for understanding the spreading of diseases…

物理与社会 · 物理学 2020-11-24 Marco A. Rodríguez-Flores , Fragkiskos Papadopoulos

The recent reconstruction of the Drosophila brain provides a neural network of unprecedented size and level of details. In this work, we study the geometrical properties of this system by applying network embedding techniques to the graph…

物理与社会 · 物理学 2026-02-19 Bendegúz Sulyok , Sámuel G. Balogh , Gergely Palla

Functional connectomes derived from functional magnetic resonance imaging have long been used to understand the functional organization of the brain. Nevertheless, a connectome is intrinsically linked to the atlas used to create it. In…

神经元与认知 · 定量生物学 2021-07-06 Javid Dadashkarimi , Amin Karbasi , Dustin Scheinost

The human brain is a complex system, and understanding its mechanisms has been a long-standing challenge in neuroscience. The study of the functional connectome, which maps the functional connections between different brain regions, has…

神经与进化计算 · 计算机科学 2025-04-14 Tananun Songdechakraiwut , Yutong Wu

The arrangement of network nodes in hyperbolic spaces has become a widely studied problem, motivated by numerous results suggesting the existence of hidden metric spaces behind the structure of complex networks. Although several methods…

物理与社会 · 物理学 2023-02-06 Bianka Kovács , Gergely Palla

Recent developments in network neuroscience have highlighted the importance of developing techniques for analyzing and modeling brain networks. A particularly powerful approach for studying complex neural systems is to formulate generative…

神经元与认知 · 定量生物学 2022-09-09 Viplove Arora , Enrico Amico , Joaquín Goñi , Mario Ventresca

Finding the optimal embedding of networks into low-dimensional hyperbolic spaces is a challenge that received considerable interest in recent years, with several different approaches proposed in the literature. In general, these methods…

物理与社会 · 物理学 2024-01-08 Bendegúz Sulyok , Gergely Palla

The human connectome represents a network map of the brain's wiring diagram and the pattern into which its connections are organized is thought to play an important role in cognitive function. The generative rules that shape the topology of…

Hyperbolic networks are supposed to be congruent with their underlying latent geometry and following geodesics in the hyperbolic space is believed equivalent to navigate through topological shortest paths (TSP). This assumption of…

社会与信息网络 · 计算机科学 2020-05-28 Carlo Vittorio Cannistraci , Alessandro Muscoloni

Structural connectivity in the brain is typically studied by reducing its observation to a single spatial resolution. However, the brain possesses a rich architecture organized over multiple scales linked to one another. We explored the…

物理与社会 · 物理学 2020-09-07 Muhua Zheng , Antoine Allard , Patric Hagmann , Yasser Alemán-Gómez , M. Ángeles Serrano

Hyperbolic geometry has emerged as a powerful tool for modeling complex, structured data, particularly where hierarchical or tree-like relationships are present. By enabling embeddings with lower distortion, hyperbolic neural networks offer…

机器学习 · 计算机科学 2025-06-18 Pol Arévalo , Alexis Molina , Álvaro Ciudad

Network embedding is a fervid topic in current networks science and observes that most real complex systems can be embedded in hidden metrics space and emerge as the geometrical property, where the geometric distance between nodes…

物理与社会 · 物理学 2020-04-28 Zongning Wu , Zengru Di , Ying Fan

Due to its geometric properties, hyperbolic space can support high-fidelity embeddings of tree- and graph-structured data, upon which various hyperbolic networks have been developed. Existing hyperbolic networks encode geometric priors not…

机器学习 · 计算机科学 2023-03-14 Tao Yu , Christopher De Sa
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