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This paper presents a novel DNA sequences alignment method based on inverted index. Now most large scale information retrieval system are all use inverted index as the basic data structure. But its application in DNA sequence alignment is…

基因组学 · 定量生物学 2013-07-02 Wang Liang , Zhao KaiYong

The continually increasing volume of DNA sequence data has resulted in a growing demand for fast implementations of core algorithms. Computation of pairwise alignments between candidate haplotypes and sequencing reads using Pair-HMMs is a…

分布式、并行与集群计算 · 计算机科学 2026-01-27 Bertil Schmidt , Felix Kallenborn , Alexander Wichmann , Alejandro Chacon , Christian Hundt

Coherent optics has demonstrated significant potential as a viable solution for achieving 100 Gb/s and higher speeds in single-wavelength passive optical networks (PON). However, upstream burst-mode coherent detection is a major challenge…

信号处理 · 电气工程与系统科学 2024-09-24 Yongxin Sun , Hexun Jiang , Yicheng Xu , Mengfan Fu , Yixiao Zhu , Lilin Yi , Weisheng Hu , Qunbi Zhuge

The alignment of biological sequences such as DNA, RNA, and proteins, is one of the basic tools that allow to detect evolutionary patterns, as well as functional/structural characterizations between homologous sequences in different…

定量方法 · 定量生物学 2023-05-01 Louise Budzynski , Andrea Pagnani

Our work aims to estimate the camera motion mounted on the head of a mobile robot or a moving object from RGB-D images in a static scene. The problem of motion estimation is transformed into a nonlinear least squares function. Methods for…

机器人学 · 计算机科学 2023-11-13 Slimane Djema , Zoubir Abdeslem Benselama , Ramdane Hedjar , Krabi Abdallah

Training of deep neural networks (DNNs) frequently involves optimizing several millions or even billions of parameters. Even with modern computing architectures, the computational expense of DNN training can inhibit, for instance, network…

机器学习 · 计算机科学 2020-06-26 Mauricio E. Tano , Gavin D. Portwood , Jean C. Ragusa

A rapid and low-cost method to sequence DNA would usher in a revolution in medicine. We propose and theoretically show the feasibility of a protocol for sequencing based on the distributions of transverse electrical currents of…

软凝聚态物质 · 物理学 2015-06-25 Johan Lagerqvist , Michael Zwolak , Massimiliano Di Ventra

A novel non-linear approach to fast and effective comparison of sequences is presented, compared to the traditional cross-correlation operator, and illustrated with respect to DNA sequences.

计算机视觉与模式识别 · 计算机科学 2007-05-23 Luciano da Fontoura Costa

With small-scale quantum processors transitioning from experimental physics labs to industrial products, these processors allow us to efficiently compute important algorithms in various fields. In this paper, we propose a quantum algorithm…

量子物理 · 物理学 2020-05-22 Aritra Sarkar , Zaid Al-Ars , Carmen G. Almudever , Koen Bertels

This paper proposes a novel visual simultaneous localization and mapping (SLAM) system called Hybrid Depth-augmented Panoramic Visual SLAM (HDPV-SLAM), that employs a panoramic camera and a tilted multi-beam LiDAR scanner to generate…

To achieve a distributed reflectivity measurement along an optical fiber, we develop a simplified cost-effective configuration of optical correlation- (or coherence-) domain reflectometry based on a synthesized optical coherence function by…

Nanopore based sequencing has demonstrated significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing. We propose a specific multi-layered…

介观与纳米尺度物理 · 物理学 2014-05-15 Towfiq Ahmed , Jason T. Haraldsen , John J. Rehr , Massimiliano Di Ventra , Ivan K. Schuller , Alexander V. Balatsky

Motivation: Detection of structural variants (SV) from the alignment of sample DNA reads to the reference genome is an important problem in understanding human diseases. Long reads that can span repeat regions, along with an accurate…

基因组学 · 定量生物学 2023-01-25 Dhaivat Joshi , Suhas Diggavi , Mark J. P. Chaisson , Sreeram Kannan

High dynamic range (HDR) imaging is an important task in image processing that aims to generate well-exposed images in scenes with varying illumination. Although existing multi-exposure fusion methods have achieved impressive results,…

计算机视觉与模式识别 · 计算机科学 2023-05-30 Jun Xiao , Qian Ye , Tianshan Liu , Cong Zhang , Kin-Man Lam

Model order reduction (MOR) has long been a mainstream strategy to accelerate large-scale transient circuit simulation. Dynamic Mode Decomposition (DMD) represents a novel data-driven characterization method, extracting dominant dynamical…

信号处理 · 电气工程与系统科学 2025-08-06 Na Liu , Chengliang Dai , Qiuyue Wu , Qiuqi Li , Guoxiong Cai

Genomic sequence alignment is an important research topic in bioinformatics and continues to attract significant efforts. As genomic data grow exponentially, however, most of alignment methods face challenges due to their huge computational…

计算工程、金融与科学 · 计算机科学 2018-06-07 Hanyu Jiang , Narayan Ganesan , Yu-Dong Yao

Both high-level and high-resolution feature representations are of great importance in various visual understanding tasks. To acquire high-resolution feature maps with high-level semantic information, one common strategy is to adopt dilated…

计算机视觉与模式识别 · 计算机科学 2020-12-21 Jianbo Liu , Sijie Ren , Yuanjie Zheng , Xiaogang Wang , Hongsheng Li

Evolutionary computation methods have been successfully applied to neural networks since two decades ago, while those methods cannot scale well to the modern deep neural networks due to the complicated architectures and large quantities of…

神经与进化计算 · 计算机科学 2019-03-12 Yanan Sun , Bing Xue , Mengjie Zhang , Gary G. Yen

The primary challenge in accelerating image super-resolution lies in reducing computation while maintaining performance and adaptability. Motivated by the observation that high-frequency regions (e.g., edges and textures) are most critical…

计算机视觉与模式识别 · 计算机科学 2025-05-13 Wei Shang , Dongwei Ren , Wanying Zhang , Pengfei Zhu , Qinghua Hu , Wangmeng Zuo

In this work, we present a novel dense-correspondence method for 6DoF object pose estimation from a single RGB-D image. While many existing data-driven methods achieve impressive performance, they tend to be time-consuming due to their…

计算机视觉与模式识别 · 计算机科学 2024-04-09 Yongliang Lin , Yongzhi Su , Praveen Nathan , Sandeep Inuganti , Yan Di , Martin Sundermeyer , Fabian Manhardt , Didier Stricker , Jason Rambach , Yu Zhang