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Background: Biomedical data are usually collections of longitudinal data assessed at certain points in time. Clinical observations assess the presences and severity of symptoms, which are the basis for description and modeling of disease…

数据库 · 计算机科学 2023-07-26 Richard Fechner , Jens Dörpinghaus , Robert Rockenfeller , Jennifer Faber

We introduce the Reduced-Rank Hidden Markov Model (RR-HMM), a generalization of HMMs that can model smooth state evolution as in Linear Dynamical Systems (LDSs) as well as non-log-concave predictive distributions as in…

机器学习 · 计算机科学 2009-12-23 Sajid M. Siddiqi , Byron Boots , Geoffrey J. Gordon

The hidden Markov model (HMM) is a fundamental tool for sequence modeling that cleanly separates the hidden state from the emission structure. However, this separation makes it difficult to fit HMMs to large datasets in modern NLP, and they…

计算与语言 · 计算机科学 2020-11-10 Justin T. Chiu , Alexander M. Rush

Neural activity data can be associated with behavioral and physiological variables by analyzing their changes in the temporal domain. However, such relationships are often difficult to quantify and test, requiring advanced computational…

神经元与认知 · 定量生物学 2026-01-23 Nick Yao Larsen , Laura Paulsen , Christine Ahrends , Anderson M. Winkler , Diego Vidaurre

Hidden Markov models (HMMs) are popular tools for analysing animal behaviour based on movement, acceleration and other sensor data. In particular, these models allow to infer how the animal's decision-making process interacts with internal…

统计方法学 · 统计学 2025-12-22 Maya N. Vienken , Jan-Ole Koslik , Roland Langrock

Hidden semi-Markov models (HSMMs) are latent variable models which allow latent state persistence and can be viewed as a generalization of the popular hidden Markov models (HMMs). In this paper, we introduce a novel spectral algorithm to…

机器学习 · 统计学 2016-03-01 Igor Melnyk , Arindam Banerjee

The hidden Markov model (HMM) has been a workhorse of single molecule data analysis and is now commonly used as a standalone tool in time series analysis or in conjunction with other analyses methods such as tracking. Here we provide a…

数据分析、统计与概率 · 物理学 2017-06-28 Ioannis Sgouralis , Steve Presse

There is an increase in interest to model driving maneuver patterns via the automatic unsupervised clustering of naturalistic sequential kinematic driving data. The patterns learned are often used in transportation research areas such as…

机器学习 · 统计学 2023-11-14 Matthew Aguirre , Wenbo Sun , Jionghua , Jin , Yang Chen

1. Advances in tracking technology have led to an exponential increase in animal location data, greatly enhancing our ability to address interesting questions in movement ecology, but also presenting new challenges related to data manage-…

定量方法 · 定量生物学 2018-05-10 Johannes Signer , John Fieberg , Tal Avgar

The Hidden Markov Model (HMM) can predict the future value of a time series based on its current and previous values, making it a powerful algorithm for handling various types of time series. Numerous studies have explored the improvement…

机器学习 · 计算机科学 2024-02-28 YeXin Huang

New types of high-resolution animal movement data allow for increasingly comprehensive biological inference, but method development to meet the statistical challenges associated with such data is lagging behind. In this contribution, we…

统计方法学 · 统计学 2025-07-08 Ferdinand V. Stoye , Annika Hoyer , Roland Langrock

Hidden Markov Models (HMMs) comprise a powerful generative approach for modeling sequential data and time-series in general. However, the commonly employed assumption of the dependence of the current time frame to a single or multiple…

机器学习 · 计算机科学 2021-09-13 Konstantinos P. Panousis , Sotirios Chatzis , Sergios Theodoridis

The R package lcmm provides a series of functions to estimate statistical models based on linear mixed model theory. It includes the estimation of mixed models and latent class mixed models for Gaussian longitudinal outcomes (hlme),…

统计计算 · 统计学 2017-08-24 Cécile Proust-Lima , Viviane Philipps , Benoit Liquet

Ecological systems can often be characterised by changes among a finite set of underlying states pertaining to individuals, populations, communities, or entire ecosystems through time. Owing to the inherent difficulty of empirical field…

Hidden Markov Models (HMMs) are foundational tools for modeling sequential data with latent Markovian structure, yet fitting them to real-world data remains computationally challenging. In this work, we show that pre-trained large language…

机器学习 · 计算机科学 2026-04-27 Yijia Dai , Zhaolin Gao , Yahya Sattar , Sarah Dean , Jennifer J. Sun

[This paper was initially published in PHME conference in 2016, selected for further publication in International Journal of Prognostics and Health Management.] This paper describes an Autoregressive Partially-hidden Markov model (ARPHMM)…

机器学习 · 统计学 2021-05-04 Pablo Juesas , Emmanuel Ramasso , Sébastien Drujont , Vincent Placet

We introduce the BMRMM package implementing Bayesian inference for a class of Markov renewal mixed models which can characterize the stochastic dynamics of a collection of sequences, each comprising alternative instances of categorical…

统计方法学 · 统计学 2024-09-18 Yutong Wu , Abhra Sarkar

Autonomous agents require the capability to identify dynamic objects in their environment for safe planning and navigation. Incomplete and erroneous dynamic detections jeopardize the agent's ability to accomplish its task. Dynamic detection…

机器人学 · 计算机科学 2024-10-25 Vedant Bhandari , Jasmin James , Tyson Phillips , P. Ross McAree

There are many situations in which it would be beneficial for a robot to have predictive abilities similar to those of rational humans. Some of these situations include collaborative robots, robots in adversarial situations, and for dynamic…

机器人学 · 计算机科学 2014-12-02 Alan J. Hamlet , Carl D. Crane

Hidden Markov models (HMMs) are probabilistic methods in which observations are seen as realizations of a latent Markov process with discrete states that switch over time. Moving beyond standard statistical tests, HMMs offer a statistical…

统计方法学 · 统计学 2024-03-20 S. Mildiner Moraga , E. Aarts