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Cancer is a heterogeneous disease with diverse molecular etiologies and outcomes. The Cancer Genome Atlas (TCGA) has released a large compendium of over 10,000 tumors with RNA-seq gene expression measurements. Gene expression captures the…

基因组学 · 定量生物学 2017-11-15 Gregory P. Way , Casey S. Greene

We introduce the concept of a Modular Autoencoder (MAE), capable of learning a set of diverse but complementary representations from unlabelled data, that can later be used for supervised tasks. The learning of the representations is…

机器学习 · 计算机科学 2015-11-24 Henry W J Reeve , Gavin Brown

In this work, we propose to utilize a variational autoencoder (VAE) for channel estimation (CE) in underdetermined (UD) systems. The basis of the method forms a recently proposed concept in which a VAE is trained on channel state…

信号处理 · 电气工程与系统科学 2024-03-29 Michael Baur , Nurettin Turan , Benedikt Fesl , Wolfgang Utschick

Variational Autoencoders (VAEs) provide a flexible and scalable framework for non-linear dimensionality reduction. However, in application domains such as genomics where data sets are typically tabular and high-dimensional, a black-box…

机器学习 · 统计学 2020-03-10 Kaspar Märtens , Christopher Yau

This paper presents an infinite variational autoencoder (VAE) whose capacity adapts to suit the input data. This is achieved using a mixture model where the mixing coefficients are modeled by a Dirichlet process, allowing us to integrate…

机器学习 · 计算机科学 2016-11-28 Ehsan Abbasnejad , Anthony Dick , Anton van den Hengel

Variational autoencoders (VAEs) are a popular class of deep generative models with many variants and a wide range of applications. Improvements upon the standard VAE mostly focus on the modelling of the posterior distribution over the…

机器学习 · 计算机科学 2022-11-02 James Langley , Miguel Monteiro , Charles Jones , Nick Pawlowski , Ben Glocker

Variational Autoencoders (VAE) are widely used for dimensionality reduction of large-scale tabular and image datasets, under the assumption of independence between data observations. In practice, however, datasets are often correlated, with…

机器学习 · 统计学 2024-12-25 Giora Simchoni , Saharon Rosset

We propose to utilize a variational autoencoder (VAE) for data-driven channel estimation. The underlying true and unknown channel distribution is modeled by the VAE as a conditional Gaussian distribution in a novel way, parameterized by the…

信号处理 · 电气工程与系统科学 2023-04-07 Michael Baur , Benedikt Fesl , Michael Koller , Wolfgang Utschick

Variational autoencoders (VAEs), that are built upon deep neural networks have emerged as popular generative models in computer vision. Most of the work towards improving variational autoencoders has focused mainly on making the…

机器学习 · 统计学 2016-11-17 Siddharth Agrawal , Ambedkar Dukkipati

Electron and scanning probe microscopy produce vast amounts of data in the form of images or hyperspectral data, such as EELS or 4D STEM, that contain information on a wide range of structural, physical, and chemical properties of…

机器学习 · 计算机科学 2023-06-09 Arpan Biswas , Maxim Ziatdinov , Sergei V. Kalinin

Representation learning seeks to expose certain aspects of observed data in a learned representation that's amenable to downstream tasks like classification. For instance, a good representation for 2D images might be one that describes only…

Autoencoders have found widespread application in both their original deterministic form and in their variational formulation (VAEs). In scientific applications and in image processing it is often of interest to consider data that are…

机器学习 · 统计学 2025-09-09 Justin Bunker , Mark Girolami , Hefin Lambley , Andrew M. Stuart , T. J. Sullivan

In this paper we present a new implementation of a Variational Autoencoder (VAE) for the calibration of sensors. We propose that the VAE can be used to calibrate sensor data by training the latent space as a calibration output. We discuss…

机器学习 · 计算机科学 2025-11-04 Travis Barrett , Amit Kumar Mishra , Joyce Mwangama

Due to their unsupervised training and uncertainty estimation, deep Variational Autoencoders (VAEs) have become powerful tools for reconstruction-based Time Series Anomaly Detection (TSAD). Existing VAE-based TSAD methods, either…

机器学习 · 计算机科学 2024-01-09 Zhangkai Wu , Longbing Cao , Qi Zhang , Junxian Zhou , Hui Chen

Masked Autoencoder (MAE) has recently been shown to be effective in pre-training Vision Transformers (ViT) for natural image analysis. By reconstructing full images from partially masked inputs, a ViT encoder aggregates contextual…

图像与视频处理 · 电气工程与系统科学 2023-04-24 Lei Zhou , Huidong Liu , Joseph Bae , Junjun He , Dimitris Samaras , Prateek Prasanna

Anomaly detection using dimensionality reduction has been an essential technique for monitoring multidimensional data. Although deep learning-based methods have been well studied for their remarkable detection performance, their…

机器学习 · 统计学 2018-12-24 Yasuhiro Ikeda , Kengo Tajiri , Yuusuke Nakano , Keishiro Watanabe , Keisuke Ishibashi

A variational autoencoder (VAE) is a probabilistic machine learning framework for posterior inference that projects an input set of high-dimensional data to a lower-dimensional, latent space. The latent space learned with a VAE offers…

机器学习 · 计算机科学 2022-11-16 Rafael Pastrana

Density estimation, compression and data generation are crucial tasks in artificial intelligence. Variational Auto-Encoders (VAEs) constitute a single framework to achieve these goals. Here, we present a novel class of generative models,…

机器学习 · 统计学 2021-07-07 Ioannis Gatopoulos , Jakub M. Tomczak

Understanding relationships across multiple imaging modalities is central to neuroimaging research. We introduce the Integrative Variational Autoencoder (InVA), the first hierarchical VAE framework for image-on-image regression in…

图像与视频处理 · 电气工程与系统科学 2025-09-15 Bowen Lei , Yeseul Jeon , Rajarshi Guhaniyogi , Aaron Scheffler , Bani Mallick , Alzheimer's Disease Neuroimaging Initiatives

Current deep learning-based manifold learning algorithms such as the variational autoencoder (VAE) require fully sampled data to learn the probability density of real-world datasets. Once learned, the density can be used for a variety of…

图像与视频处理 · 电气工程与系统科学 2021-12-13 Qing Zou , Abdul Haseeb Ahmed , Prashant Nagpal , Sarv Priya , Rolf Schulte , Mathews Jacob