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The assembly and persistence of ecological communities can be understood as the result of the interaction and migration of species. Here we study a single community subject to migration from a species pool in which inter-specific…

种群与进化 · 定量生物学 2023-07-27 Matthew Dopson , Clive Emary

Resilient ecological systems will be better able to maintain their structure and function in the emerging Anthropocene. Estimating the resilience of different systems will therefore provide valuable insight for conservation decision-makers,…

动力系统 · 数学 2023-06-16 Cailan Jeynes-Smith , Michael Bode , Robyn P. Araujo

In a cell or microorganism the processes that generate mass, energy, information transfer, and cell fate specification are seamlessly integrated through a complex network of various cellular constituents and reactions. However, despite the…

统计力学 · 物理学 2009-10-31 H. Jeong , B. Tombor , R. Albert , Z. N. Oltvai , A. -L. Barabasi

Tropospheric ozone (O3) time series have been converted into complex networks through the recent so-called Visibility Graph (VG), using the data from air quality stations located in the western part of Andalusia (Spain). The aim is to apply…

Microbes can affect processes from food production to human health. Such microbes are not isolated, but rather interact with each other and establish connections with their living environments. Understanding these interactions is essential…

应用统计 · 统计学 2021-09-07 Liang Chen , Qiuyan He , Hui Wan , Shun He , Minghua Deng

Systems of dynamical interactions between competing species can be used to model many complex systems, and can be mathematically described by {\em random} networks. Understanding how patterns of activity arise in such systems is important…

适应与自组织系统 · 物理学 2016-01-21 Nick McCullen , Thomas Wagenknecht

The interactions among the constituent members of a microbial community play a major role in determining the overall behavior of the community and the abundance levels of its members. These interactions can be modeled using a network whose…

人工智能 · 计算机科学 2020-10-20 Sahar Tavakoli

To comprehend the multipartite organization of large-scale biological and social systems, we introduce a new information theoretic approach that reveals community structure in weighted and directed networks. The method decomposes a network…

物理与社会 · 物理学 2008-02-13 M. Rosvall , C. T. Bergstrom

Although networks provide a powerful approach to study a large variety of ecological systems, their formulation does not typically account for multiple interaction types, interactions that vary in space and time, and interconnected systems…

定量方法 · 定量生物学 2017-03-27 Shai Pilosof , Mason A. Porter , Mercedes Pascual , Sonia Kéfi

The investigation of leaf-level traits in response to varying environmental conditions has immense importance for understanding plant ecology. Remote sensing technology enables measurement of the reflectance of plants to make inferences…

One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

离散数学 · 计算机科学 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

Given the large size and complexity of most biochemical regulation and signaling networks, there is a non-trivial relationship between the micro-level logic of component interactions and the observed macro-dynamics. Here we address this…

分子网络 · 定量生物学 2023-04-19 Thomas Parmer , Luis M. Rocha

Here we propose and investigate the use of visibility graphs to model the feature map of a neural network. The model, initially devised for studies on complex networks, is employed here for the classification of texture images. The work is…

计算机视觉与模式识别 · 计算机科学 2021-08-31 Joao B. Florindo , Young-Sup Lee , Kyungkoo Jun , Gwanggil Jeon , Marcelo K. Albertini

The vision of Organic Computing addresses challenges that arise in the design of future information systems that are comprised of numerous, heterogeneous, resource-constrained and error-prone components or devices. Here, the notion organic…

网络与互联网体系结构 · 计算机科学 2012-04-26 Ingo Scholtes , Claudio Juan Tessone

Order can spontaneously emerge from seemingly noisy interactions between biological agents, like a flock of birds changing their direction of flight in unison, without a leader or an external cue. We are interested in the generic conditions…

Bipartite networks provide an effective resource for representing, characterizing, and modeling several abstract and real-world systems and structures involving binary relations, which include food webs, social interactions, and…

社会与信息网络 · 计算机科学 2024-02-01 Alexandre Benatti , Luciano da F. Costa

The nonlinear features of the relationships between concentrations of aerosol and volatile organic compounds (VOC) and oxides of nitrogen (NOx) in urban environments are derived directly from data of long-term routine measurements of NOx,…

大气与海洋物理 · 物理学 2020-11-04 Igor B. Konovalov

Complex systems such as ecological communities and neuron networks are essential parts of our everyday lives. These systems are composed of units which interact through intricate networks. The ability to predict sudden changes in the…

适应与自组织系统 · 物理学 2021-07-07 Deniz Eroglu , Matteo Tanzi , Sebastian van Strien , Tiago Pereira

A cell's behavior is a consequence of the complex interactions between its numerous constituents, such as DNA, RNA, proteins and small molecules. Cells use signaling pathways and regulatory mechanisms to coordinate multiple processes,…

分子网络 · 定量生物学 2007-09-12 Reka Albert

Interactions between units in phyical, biological, technological, and social systems usually give rise to intrincate networks with non-trivial structure, which critically affects the dynamics and properties of the system. The focus of most…

数据分析、统计与概率 · 物理学 2007-05-23 R. Guimera , M. Sales-Pardo , L. A. N. Amaral