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The emerging field of connectomics aims to unlock the mysteries of the brain by understanding the connectivity between neurons. To map this connectivity, we acquire thousands of electron microscopy (EM) images with nanometer-scale…

定量方法 · 定量生物学 2016-04-04 Stephen M. Plaza , Stuart E. Berg

Medical image segmentation is a critical task in computer vision, with UNet serving as a milestone architecture. The typical component of UNet family is the skip connection, however, their skip connections face two significant limitations:…

计算机视觉与模式识别 · 计算机科学 2025-10-24 Quansong He , Xiangde Min , Kaishen Wang , Tao He

Segmentation has been a major task in neuroimaging. A large number of automated methods have been developed for segmenting healthy and diseased brain tissues. In recent years, deep learning techniques have attracted a lot of attention as a…

图像与视频处理 · 电气工程与系统科学 2019-07-05 Jimit Doshi , Guray Erus , Mohamad Habes , Christos Davatzikos

In recent years, U-Net and its variants have been widely used in pathology image segmentation tasks. One of the key designs of U-Net is the use of skip connections between the encoder and decoder, which helps to recover detailed information…

图像与视频处理 · 电气工程与系统科学 2023-10-18 Zongyi Li , Hongbing Lyu , Jun Wang

Semantic segmentation, a crucial task in computer vision, often relies on labor-intensive and costly annotated datasets for training. In response to this challenge, we introduce FuseNet, a dual-stream framework for self-supervised semantic…

计算机视觉与模式识别 · 计算机科学 2023-11-23 Amirhossein Kazerouni , Sanaz Karimijafarbigloo , Reza Azad , Yury Velichko , Ulas Bagci , Dorit Merhof

Deep neural networks have evolved as the leading approach in 3D medical image segmentation due to their outstanding performance. However, the ever-increasing model size and computation cost of deep neural networks have become the primary…

计算机视觉与模式识别 · 计算机科学 2025-02-20 Boqian Wu , Qiao Xiao , Shiwei Liu , Lu Yin , Mykola Pechenizkiy , Decebal Constantin Mocanu , Maurice Van Keulen , Elena Mocanu

Early detection of lung cancer is crucial as it increases the chances of successful treatment. Automatic lung image segmentation assists doctors in identifying diseases such as lung cancer, COVID-19, and respiratory disorders. However, lung…

图像与视频处理 · 电气工程与系统科学 2024-10-22 Sadjad Rezvani , Mansoor Fateh , Yeganeh Jalali , Amirreza Fateh

In recent years, Fully Convolutional Networks (FCN) has been widely used in various semantic segmentation tasks, including multi-modal remote sensing imagery. How to fuse multi-modal data to improve the segmentation performance has always…

计算机视觉与模式识别 · 计算机科学 2018-07-25 Shihao Sun , Lei Yang , Wenjie Liu , Ruirui Li

In the field of connectomics, neuroscientists seek to identify cortical connectivity comprehensively. Neuronal boundary detection from the Electron Microscopy (EM) images is often done to assist the automatic reconstruction of neuronal…

计算机视觉与模式识别 · 计算机科学 2017-08-01 Wei Shen , Bin Wang , Yuan Jiang , Yan Wang , Alan Yuille

Recently, a growing interest has been seen in deep learning-based semantic segmentation. UNet, which is one of deep learning networks with an encoder-decoder architecture, is widely used in medical image segmentation. Combining multi-scale…

图像与视频处理 · 电气工程与系统科学 2020-04-21 Huimin Huang , Lanfen Lin , Ruofeng Tong , Hongjie Hu , Qiaowei Zhang , Yutaro Iwamoto , Xianhua Han , Yen-Wei Chen , Jian Wu

Recent successes in deep learning have started to impact neuroscience. Of particular significance are claims that current segmentation algorithms achieve "super-human" accuracy in an area known as connectomics. However, as we will show,…

计算机视觉与模式识别 · 计算机科学 2020-01-20 Drew Linsley , Junkyung Kim , David Berson , Thomas Serre

The recent years have witnessed great advances for semantic segmentation using deep convolutional neural networks (DCNNs). However, a large number of convolutional layers and feature channels lead to semantic segmentation as a…

计算机视觉与模式识别 · 计算机科学 2019-06-25 Yu Wang , Quan Zhou , Xiaofu Wu

The alignment of serial-section electron microscopy (ssEM) images is critical for efforts in neuroscience that seek to reconstruct neuronal circuits. However, each ssEM plane contains densely packed structures that vary from one section to…

计算机视觉与模式识别 · 计算机科学 2017-12-06 Inwan Yoo , David G. C. Hildebrand , Willie F. Tobin , Wei-Chung Allen Lee , Won-Ki Jeong

Reconstructing the intricate local morphology of neurons and their long-range projecting axons can address many connectivity related questions in neuroscience. The main bottleneck in connectomics pipelines is correcting topological errors,…

计算机视觉与模式识别 · 计算机科学 2025-03-05 Anna Grim , Jayaram Chandrashekar , Uygar Sumbul

Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images. We present a convolution neural network (CNN) based deep learning architecture for segmentation of objects in…

计算机视觉与模式识别 · 计算机科学 2019-01-24 Shan E Ahmed Raza , Linda Cheung , Muhammad Shaban , Simon Graham , David Epstein , Stella Pelengaris , Michael Khan , Nasir M. Rajpoot

Semantic segmentation necessitates approaches that learn high-level characteristics while dealing with enormous amounts of data. Convolutional neural networks (CNNs) can learn unique and adaptive features to achieve this aim. However, due…

计算机视觉与模式识别 · 计算机科学 2023-07-19 Hasan AlMarzouqi , Lyes Saad Saoud

In recent years, Denoising Diffusion Models have demonstrated remarkable success in generating semantically valuable pixel-wise representations for image generative modeling. In this study, we propose a novel end-to-end framework, called…

图像与视频处理 · 电气工程与系统科学 2023-03-21 Zhaohu Xing , Liang Wan , Huazhu Fu , Guang Yang , Lei Zhu

Automated brain tissue segmentation into white matter (WM), gray matter (GM), and cerebro-spinal fluid (CSF) from magnetic resonance images (MRI) is helpful in the diagnosis of neuro-disorders such as epilepsy, Alzheimer's, multiple…

计算机视觉与模式识别 · 计算机科学 2018-06-13 Pulkit Kumar , Pravin Nagar , Chetan Arora , Anubha Gupta

The state-of-the-art models for medical image segmentation are variants of U-Net and fully convolutional networks (FCN). Despite their success, these models have two limitations: (1) their optimal depth is apriori unknown, requiring…

图像与视频处理 · 电气工程与系统科学 2020-01-30 Zongwei Zhou , Md Mahfuzur Rahman Siddiquee , Nima Tajbakhsh , Jianming Liang

Image segmentation is a fundamental task in image analysis and clinical practice. The current state-of-the-art techniques are based on U-shape type encoder-decoder networks with skip connections, called U-Net. Despite the powerful…

计算机视觉与模式识别 · 计算机科学 2023-02-02 Chun-Wun Cheng , Christina Runkel , Lihao Liu , Raymond H Chan , Carola-Bibiane Schönlieb , Angelica I Aviles-Rivero
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