相关论文: An Optimal Ancestry Labeling Scheme with Applicati…

We propose a new succinct representation of labeled trees which represents a tree T using |T|H_k(T) number of bits (plus some smaller order terms), where |T|H_k(T) denotes the k-th order (tree label) entropy, as defined by Ferragina at al.…

One strategy for reconstruction of phylogenetic networks is to solve the phylogenetic network problem, which involves inferring phylogenetic trees first and subsequently computing the smallest phylogenetic network that displays all the…

The supertree problem asking for a tree displaying a set of consistent input trees has been largely considered for the reconstruction of species trees. Here, we rather explore this framework for the sake of reconstructing a gene tree from a…

This paper models the crowdsourced labeling/classification problem as a sparsely encoded source coding problem, where each query answer, regarded as a code bit, is the XOR of a small number of labels, as source information bits. In this…

We give a representation for labeled ordered trees that supports labeled queries such as finding the i-th ancestor of a node with a given label. Our representation is succinct, namely the redundancy is small-o of the optimal space for…

Given a digraph $D$, the Minimum Leaf Out-Branching problem (MinLOB) is the problem of finding in $D$ an out-branching with the minimum possible number of leaves, i.e., vertices of out-degree 0. We prove that MinLOB is polynomial-time…

Balliu et al. (DISC 2020) classified the hardness of solving binary labeling problems with distributed graph algorithms; in these problems the task is to select a subset of edges in a $2$-colored tree in which white nodes of degree $d$ and…

We study the problem of constructing phylogenetic trees for a given set of species. The problem is formulated as that of finding a minimum Steiner tree on $n$ points over the Boolean hypercube of dimension $d$. It is known that an optimal…

Fitting distances to tree metrics and ultrametrics are two widely used methods in hierarchical clustering, primarily explored within the context of numerical taxonomy. Given a positive distance function…

A spanning tree $T$ of graph $G$ is a $\rho$-approximate universal Steiner tree (UST) for root vertex $r$ if, for any subset of vertices $S$ containing $r$, the cost of the minimal subgraph of $T$ connecting $S$ is within a $\rho$ factor of…

Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…

Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…

We study the private $k$-median and $k$-means clustering problem in $d$ dimensional Euclidean space. By leveraging tree embeddings, we give an efficient and easy to implement algorithm, that is empirically competitive with state of the art…

We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to…

Thin spanning trees lie at the intersection of graph theory, approximation algorithms, and combinatorial optimization. They are central to the long-standing \emph{thin tree conjecture}, which asks whether every $k$-edge-connected graph…

We study probabilistic bit-probe schemes for the membership problem. Given a set A of at most n elements from the universe of size m we organize such a structure that queries of type "Is x in A?" can be answered very quickly. H.Buhrman,…

Phylogenetic networks are a generalization of phylogenetic trees to leaf-labeled directed acyclic graphs that represent ancestral relationships between species whose past includes non-tree-like events such as hybridization and horizontal…

We consider the classical problem of sorting an input array containing $n$ elements, where each element is described with a $k$-bit comparison-key and a $w$-bit payload. A long-standing open problem is whether there exist $(k + w) \cdot o(n…

An algorithm is presented that solves the Minimum Dominating Set problem exactly using polynomial space based on dynamic programming for a tree decomposition. A direct application of dynamic programming based on a tree decomposition would…

We investigate the problem of sequentially predicting the binary labels on the nodes of an arbitrary weighted graph. We show that, under a suitable parametrization of the problem, the optimal number of prediction mistakes can be…