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Objective: To enhance automated de-identification of radiology reports by scaling transformer-based models through extensive training datasets and benchmarking performance against commercial cloud vendor systems for protected health…

Privacy is a human right that sustains patient-provider trust. Clinical notes capture a patient's private vulnerability and individuality, which are used for care coordination and research. Under HIPAA Safe Harbor, these notes are…

计算机与社会 · 计算机科学 2026-02-10 Lavender Y. Jiang , Xujin Chris Liu , Kyunghyun Cho , Eric K. Oermann

Objective: Neural network de-identification studies have focused on individual datasets. These studies assume the availability of a sufficient amount of human-annotated data to train models that can generalize to corresponding test data. In…

计算与语言 · 计算机科学 2021-08-18 Kahyun Lee , Nicholas J. Dobbins , Bridget McInnes , Meliha Yetisgen , Ozlem Uzuner

Protected health information (PHI) de-identification is critical for enabling the safe reuse of clinical notes, yet evaluating and comparing PHI de-identification models typically depends on costly, small-scale expert annotations. We…

人工智能 · 计算机科学 2025-11-19 Guanchen Wu , Zuhui Chen , Yuzhang Xie , Carl Yang

Large-scale clinical data is invaluable to driving many computational scientific advances today. However, understandable concerns regarding patient privacy hinder the open dissemination of such data and give rise to suboptimal siloed…

计算与语言 · 计算机科学 2019-05-23 Oren Melamud , Chaitanya Shivade

De-identification of medical images is a critical step to ensure privacy during data sharing in research and clinical settings. The initial step in this process involves detecting Protected Health Information (PHI), which can be found in…

计算机视觉与模式识别 · 计算机科学 2025-06-26 Tuan Truong , Ivo M. Baltruschat , Mark Klemens , Grit Werner , Matthias Lenga

Removing patient-specific information from medical images is crucial to enable sharing and open science without compromising patient identities. However, many methods currently used for deidentification have negative effects on downstream…

计算机视觉与模式识别 · 计算机科学 2026-04-14 Adrienne Kline , Abhijit Gaonkar , Daniel Pittman , Chris Kuehn , Nils Forkert

De-identification is the task of identifying protected health information (PHI) in the clinical text. Existing neural de-identification models often fail to generalize to a new dataset. We propose a simple yet effective data augmentation…

计算与语言 · 计算机科学 2020-10-13 Xiang Yue , Shuang Zhou

When most patients visit physicians in a clinic or a hospital, they are asked about their medical history and related medical tests' results which might not exist or might simply have been lost over time. In emergency situations, many…

计算机与社会 · 计算机科学 2016-05-12 Nael A. H AbuOun , Ayman Abdel-Hamid , Mohamad Abou El-Nasr

Predicting health risks from electronic health records (EHR) is a topic of recent interest. Deep learning models have achieved success by modeling temporal and feature interaction. However, these methods learn insufficient representations…

机器学习 · 计算机科学 2023-12-19 Zhihao Yu , Chaohe Zhang , Yasha Wang , Wen Tang , Jiangtao Wang , Liantao Ma

Unstructured textual data is at the heart of healthcare systems. For obvious privacy reasons, these documents are not accessible to researchers as long as they contain personally identifiable information. One way to share this data while…

密码学与安全 · 计算机科学 2022-11-03 Yakini Tchouka , Jean-François Couchot , David Laiymani

A crucial step within secondary analysis of electronic health records (EHRs) is to identify the patient cohort under investigation. While EHRs contain medical billing codes that aim to represent the conditions and treatments patients may…

Large Transformers pretrained over clinical notes from Electronic Health Records (EHR) have afforded substantial gains in performance on predictive clinical tasks. The cost of training such models (and the necessity of data access to do so)…

计算与语言 · 计算机科学 2021-04-26 Eric Lehman , Sarthak Jain , Karl Pichotta , Yoav Goldberg , Byron C. Wallace

Understanding deep learning model behavior is critical to accepting machine learning-based decision support systems in the medical community. Previous research has shown that jointly using clinical notes with electronic health record (EHR)…

机器学习 · 计算机科学 2022-12-07 Severin Husmann , Hugo Yèche , Gunnar Rätsch , Rita Kuznetsova

Recent research advances achieve human-level accuracy for de-identifying free-text clinical notes on research datasets, but gaps remain in reproducing this in large real-world settings. This paper summarizes lessons learned from building a…

计算与语言 · 计算机科学 2023-12-15 Veysel Kocaman , Hasham Ul Haq , David Talby

Data sharing is crucial for open science and reproducible research, but the legal sharing of clinical data requires the removal of protected health information from electronic health records. This process, known as de-identification, is…

机器学习 · 计算机科学 2024-01-04 Yuxin Xiao , Shulammite Lim , Tom Joseph Pollard , Marzyeh Ghassemi

Clinicians spend a significant amount of time inputting free-form textual notes into Electronic Health Records (EHR) systems. Much of this documentation work is seen as a burden, reducing time spent with patients and contributing to…

计算与语言 · 计算机科学 2018-08-09 Peter J. Liu

Clinical notes in Electronic Health Records (EHR) present rich documented information of patients to inference phenotype for disease diagnosis and study patient characteristics for cohort selection. Unsupervised user embedding aims to…

计算与语言 · 计算机科学 2022-03-30 Xiaolei Huang , Franck Dernoncourt , Mark Dredze

Large-scale radiology data are critical for developing robust medical AI systems. However, sharing such data across hospitals remains heavily constrained by privacy concerns. Existing de-identification research in radiology mainly focus on…

计算机视觉与模式识别 · 计算机科学 2026-04-09 Chenhao Liu , Zelin Wen , Yan Tong , Junjie Zhu , Xinyu Tian , Yuchi Liu , Ashu Gupta , Syed M. S. Islam , Tom Gedeon , Yue Yao

An Electronic Health Record (EHR) is an electronic database used by healthcare providers to store patients' medical records which may include diagnoses, treatments, costs, and other personal information. Machine learning (ML) algorithms can…

机器学习 · 计算机科学 2024-06-25 Naif A. Ganadily , Han J. Xia