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Tree-based methods are popular machine learning techniques used in various fields. In this work, we review their foundations and a general framework the importance sampled learning ensemble (ISLE) that accelerates their fitting process.…

机器学习 · 统计学 2022-05-02 Yinuo Zeng

Deep learning has led to a paradigm shift in artificial intelligence, including web, text and image search, speech recognition, as well as bioinformatics, with growing impact in chemical physics. Machine learning in general and deep…

Machine learning (ML) plays an important role in quantum chemistry, providing fast-to-evaluate predictive models for various properties of molecules. However, most existing ML models for molecular electronic properties use density…

化学物理 · 物理学 2024-06-26 Hao Tang , Brian Xiao , Wenhao He , Pero Subasic , Avetik R. Harutyunyan , Yao Wang , Fang Liu , Haowei Xu , Ju Li

Artificial Intelligence (AI)-aided drug discovery is an active research field, yet AI models often exhibit poor accuracy in regression tasks for molecular property prediction, and perform catastrophically poorly for out-of-distribution…

机器学习 · 计算机科学 2026-01-06 Xiaoyu Fan , Lin Guo , Ruizhen Jia , Yang Tian , Zhihao Yang , Weihao Li , Boxue Tian

We have developed a neural network potential energy function for use in drug discovery, with chemical element support extended from 41% to 94% of druglike molecules based on ChEMBL. We expand on the work of Smith et al., with their highly…

Machine learning algorithms have been extensively exploited in energy research, due to their flexibility, automation and ability to handle big data. Among the most prominent machine learning algorithms are the boosting ones, which are known…

信号处理 · 电气工程与系统科学 2021-11-02 Hristos Tyralis , Georgia Papacharalampous

Machine-learning-based interatomic potential energy surface (PES) models are revolutionizing the field of molecular modeling. However, although much faster than electronic structure schemes, these models suffer from costly computations via…

计算物理 · 物理学 2022-08-08 Denghui Lu , Wanrun Jiang , Yixiao Chen , Linfeng Zhang , Weile Jia , Han Wang , Mohan Chen

Automatic design of organic materials requires black-box optimization in a vast chemical space. In conventional molecular design algorithms, a molecule is built as a combination of predetermined fragments. Recently, deep neural network…

化学物理 · 物理学 2018-06-27 Xiufeng Yang , Jinzhe Zhang , Kazuki Yoshizoe , Kei Terayama , Koji Tsuda

In this paper, we present machine learning models based on random forest classifiers, support vector machines, gradient boosted decision trees, and artificial neural networks to predict participation in cancer screening programs in South…

其他定量生物学 · 定量生物学 2021-01-29 Donghyun Kim

Molecule property prediction is a fundamental problem for computer-aided drug discovery and materials science. Quantum-chemical simulations such as density functional theory (DFT) have been widely used for calculating the molecule…

机器学习 · 计算机科学 2019-11-26 Hiroyuki Shindo , Yuji Matsumoto

Based on decision trees, many fields have arguably made tremendous progress in recent years. In simple words, decision trees use the strategy of "divide-and-conquer" to divide the complex problem on the dependency between input features and…

机器学习 · 计算机科学 2021-01-22 Jinxiong Zhang

We propose to use boosted regression trees as a way to compute human-interpretable solutions to reinforcement learning problems. Boosting combines several regression trees to improve their accuracy without significantly reducing their…

机器学习 · 计算机科学 2018-09-20 Alexander Brown , Marek Petrik

Background: The masses of about 2500 nuclei have been measured experimentally, however more than 7000 isotopes are predicted to exist in the nuclear landscape from H (Z=1) to Og (Z=118) based on various theoretical calculations. Exploring…

核理论 · 物理学 2023-11-17 Zepeng Gao , Yongjia Wang , Hongliang Lü , Qingfeng Li , Caiwan Shen , Ling Liu

The precise prediction of molecular properties is essential for advancements in drug development, particularly in virtual screening and compound optimization. The recent introduction of numerous deep learning-based methods has shown…

机器学习 · 计算机科学 2024-07-01 Taojie Kuang , Pengfei Liu , Zhixiang Ren

This paper presents a new approach for trees-based regression, such as simple regression tree, random forest and gradient boosting, in settings involving correlated data. We show the problems that arise when implementing standard…

统计方法学 · 统计学 2021-08-09 Assaf Rabinowicz , Saharon Rosset

We propose an online training procedure for a transformer-based automated theorem prover. Our approach leverages a new search algorithm, HyperTree Proof Search (HTPS), inspired by the recent success of AlphaZero. Our model learns from…

Boosted decision trees are applied to particle identification in the MiniBooNE experiment operated at Fermi National Accelerator Laboratory (Fermilab) for neutrino oscillations. Numerous attempts are made to tune the boosted decision trees,…

数据分析、统计与概率 · 物理学 2007-05-23 Hai-Jun Yang , Byron P. Roe , Ji Zhu

We present a unified probabilistic gradient boosting framework for regression tasks that models and predicts the entire conditional distribution of a univariate response variable as a function of covariates. Our likelihood-based approach…

机器学习 · 统计学 2022-04-05 Alexander März , Thomas Kneib

Within first-principles density functional theory (DFT) frameworks, accurate but fast prediction of electronic structures of nanoparticles (NPs) remains challenging. Herein, we propose a machine-learning architecture to rapidly but…

材料科学 · 物理学 2020-07-22 Kihoon Bang , Byung Chul Yeo , Donghun Kim , Sang Soo Han , Hyuck Mo Lee

Machine learning (ML) outperforms traditional approaches in many molecular design tasks. ML models usually predict molecular properties from a 2D chemical graph or a single 3D structure, but neither of these representations accounts for the…

计算物理 · 物理学 2022-02-11 Simon Axelrod , Rafael Gomez-Bombarelli