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Locomotion and transport of microorganisms in fluids is an essential aspect of life. Search for food, orientation toward light, spreading of off-spring, and the formation of colonies are only possible due to locomotion. Swimming at the…

生物物理 · 物理学 2015-05-26 Jens Elgeti , Roland G. Winkler , Gerhard Gompper

Bacteria typically reside in heterogeneous environments with various chemogradients where motile cells can gain an advantage over non-motile cells. Since motility is energetically costly, cells must optimize their swimming speed and…

种群与进化 · 定量生物学 2020-05-05 Gurdip Uppal , Weiyi Hu , Dervis Can Vural

The intricate wobbling motion of flagellated bacteria, characterized by the periodic precession of the cell body, is a determinant factor in their motility and navigation within complex fluid environments. While well-studied in quiescent…

软凝聚态物质 · 物理学 2026-01-26 Wei Feng , Fanglong Dang , Hao Luo , Alan C. H. Tsang , Yanan Liu , Guangyin Jing

Filters whose porosity decreases with depth are often more efficient at removing solute from a fluid than filters with a uniform porosity. We investigate this phenomenon via an extension of homogenization theory that accounts for a…

流体动力学 · 物理学 2016-02-11 Mohit P. Dalwadi , Ian M. Griffiths , Maria Bruna

We demonstrate with experiments and simulations how microscopic self-propelled particles navigate through environments presenting complex spatial features, which mimic the conditions inside cells, living organisms and future lab-on-a-chip…

The interplay between energy efficiency and evolutionary mechanisms is addressed. One important question is how evolutionary mechanisms can select for the optimised usage of energy in situations where it does not lead to immediate…

种群与进化 · 定量生物学 2016-11-21 André Amado , Lenin Fernández , Weini Huang , Fernando F. Ferreira , Paulo R. A. Campos

We model filtration of a feed solution, containing both small and large foulant particles, by a membrane filter. The membrane interior is modeled as a network of pores, allowing for the simultaneous adsorption of small particles and sieving…

流体动力学 · 物理学 2025-08-19 Binan Gu , Pejman Sanaei , Lou Kondic , Linda J. Cummings

We combine a general formulation of microswimmmer equations of motion with a numerical bead-shell model to calculate the hydrodynamic interactions with the fluid, from which the swimming speed, power and efficiency are extracted. From this…

软凝聚态物质 · 物理学 2017-03-07 Bram Bet , Gijs Boosten , Marjolein Dijkstra , René van Roij

Predicting evolution of expanding populations is critical to control biological threats such as invasive species and cancer metastasis. Expansion is primarily driven by reproduction and dispersal, but nature abounds with examples of…

种群与进化 · 定量生物学 2019-04-26 Maxime Deforet , Carlos Carmona-Fontaine , Kirill S. Korolev , Joao B. Xavier

Microorganism motility often takes place within complex, viscoelastic fluid environments, e.g., sperm in cervicovaginal mucus and bacteria in biofilms. In such complex fluids, strains and stresses generated by the microorganism are stored…

Microorganisms are rarely found in Nature swimming freely in an unbounded fluid. Instead, they typically encounter other organisms, hard walls, or deformable boundaries such as free interfaces or membranes. Hydrodynamic interactions between…

流体动力学 · 物理学 2013-10-21 Marcelo A. Dias , Thomas R. Powers

Experiments show that cellular uptake of nanoparticles, via receptor-mediated endocytosis, strongly depends on nanoparticle size. There is an optimal size, approximately 50 nm in diameter, at which cellular uptake is the highest. In…

亚细胞过程 · 定量生物学 2014-11-27 Anand Banerjee , Alexander Berzhkovskii , Ralph Nossal

The metabolic network plays a crucial role in regulating bacterial metabolism and growth, but it is subject to inherent molecular stochasticity. Previous studies have utilized flux balance analysis and the maximum entropy method to predict…

分子网络 · 定量生物学 2024-01-12 Shaohua Guan , Zhichao Zhang , Zihan Zhang , Hualin Shi

We study how simple eukaryotic organisms make decisions in response to competing stimuli in the context of phototaxis by the unicellular alga $Chlamydomonas~reinhardtii$. While negatively phototactic cells swim directly away from a…

We study the effect of turbulence on marine life by performing numerical simulations of motile microorganisms, modelled as prolate spheroids, in isotropic homogeneous turbulence. We show that the clustering and patchiness observed in…

生物物理 · 物理学 2014-03-20 Caijuan Zhan , Gaetano Sardina , Enkeleida Lushi , Luca Brandt

Receptor-mediated endocytosis requires that the energy of adhesion overcomes the deformation energy of the plasma membrane. The resulting driving force is balanced by dissipative forces, leading to deterministic dynamical equations. While…

亚细胞过程 · 定量生物学 2019-11-20 Felix Frey , Falko Ziebert , Ulrich S. Schwarz

Motile eukaryotic cells propel themselves in viscous fluids by passing waves of bending deformation down their flagella. An infinitely long flagellum achieves a hydrodynamically optimal low-Reynolds number locomotion when the angle between…

生物物理 · 物理学 2010-03-03 Saverio E. Spagnolie , Eric Lauga

Competition between biological species in marine environments is affected by the motion of the surrounding fluid. An effective 2D compressibility can arise, for example, from the convergence and divergence of water masses at the depth at…

种群与进化 · 定量生物学 2019-01-24 Abigail Plummer , Roberto Benzi , David R. Nelson , Federico Toschi

Biological and living organisms sense and process information from their surroundings, typically having access only to a subset of external observables for a limited amount of time. In this work, we uncover how biological systems can…

统计力学 · 物理学 2024-10-10 Giorgio Nicoletti , Daniel Maria Busiello

Coral reefs play a vital role in maintaining the ecological balance of the marine ecosystem. Various marine organisms depend on coral reefs for their existence and their natural processes. Coral reefs provide the necessary habitat for…