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Prostate cancer is one of the most common causes of cancer deaths in men. There is a growing demand for noninvasively and accurately diagnostic methods that facilitate the current standard prostate cancer risk assessment in clinical…

图像与视频处理 · 电气工程与系统科学 2021-12-30 Ping-Chang Lin , Teodora Szasz , Hakizumwami B. Runesha

The performance of a Convolutional Neural Network (CNN) depends on its hyperparameters, like the number of layers, kernel sizes, or the learning rate for example. Especially in smaller networks and applications with limited computational…

计算机视觉与模式识别 · 计算机科学 2019-05-07 Lukas Hahn , Lutz Roese-Koerner , Klaus Friedrichs , Anton Kummert

Convolutional Neural Network (CNN) has gained state-of-the-art results in many pattern recognition and computer vision tasks. However, most of the CNN structures are manually designed by experienced researchers. Therefore, auto- matically…

神经与进化计算 · 计算机科学 2018-10-26 Guoqiang Zhong , Tao Li , Wenxue Liu , Yang Chen

Deep learning architectures are showing great promise in various computer vision domains including image classification, object detection, event detection and action recognition. In this study, we investigate various aspects of…

计算机视觉与模式识别 · 计算机科学 2016-08-08 Hilal Ergun , Mustafa Sert

Motivation Protein fold recognition is an important problem in structural bioinformatics. Almost all traditional fold recognition methods use sequence (homology) comparison to indirectly predict the fold of a tar get protein based on the…

机器学习 · 计算机科学 2017-06-06 Jie Hou , Badri Adhikari , Jianlin Cheng

Deep learning has established many new state of the art solutions in the last decade in areas such as object, scene and speech recognition. In particular Convolutional Neural Network (CNN) is a category of deep learning which obtains…

计算机视觉与模式识别 · 计算机科学 2016-09-26 Vincent Andrearczyk , Paul F. Whelan

Deep Neural networks are efficient and flexible models that perform well for a variety of tasks such as image, speech recognition and natural language understanding. In particular, convolutional neural networks (CNN) generate a keen…

机器学习 · 计算机科学 2018-12-20 Yesmina Jaafra , Jean Luc Laurent , Aline Deruyver , Mohamed Saber Naceur

Convolutional Neural Networks (CNNs) have shown strong promise for analyzing scientific data from many domains including particle imaging detectors. However, the challenge of choosing the appropriate network architecture (depth, kernel…

计算机视觉与模式识别 · 计算机科学 2020-01-13 Duc Hoang , Jesse Hamer , Gabriel N. Perdue , Steven R. Young , Jonathan Miller , Anushree Ghosh

Motivation: Deep learning architectures have recently demonstrated their power in predicting DNA- and RNA-binding specificities. Existing methods fall into three classes: Some are based on Convolutional Neural Networks (CNNs), others use…

机器学习 · 计算机科学 2019-01-31 Ameni Trabelsi , Mohamed Chaabane , Asa Ben Hur

In this work we present a system based on a Deep Learning approach, by using a Convolutional Neural Network, capable of classifying protein chains of amino acids based on the protein description contained in the Protein Data Bank. Each…

机器学习 · 计算机科学 2021-11-04 Damiano Perri , Marco Simonetti , Andrea Lombardi , Noelia Faginas-Lago , Osvaldo Gervasi

We present a simple, modular graph-based convolutional neural network that takes structural information from protein-ligand complexes as input to generate models for activity and binding mode prediction. Complex structures are generated by…

生物大分子 · 定量生物学 2020-02-26 Joseph A. Morrone , Jeffrey K. Weber , Tien Huynh , Heng Luo , Wendy D. Cornell

We introduce a deep convolutional neural networks (CNN) architecture to classify facial attributes and recognize face images simultaneously via a shared learning paradigm to improve the accuracy for facial attribute prediction and face…

计算机视觉与模式识别 · 计算机科学 2021-08-12 Mohammad Rasool Izadi

The computational prediction of a protein structure from its sequence generally relies on a method to assess the quality of protein models. Most assessment methods rank candidate models using heavily engineered structural features, defined…

生物大分子 · 定量生物学 2018-11-26 Georgy Derevyanko , Sergei Grudinin , Yoshua Bengio , Guillaume Lamoureux

In the task of Object Recognition, there exists a dichotomy between the categorization of objects and estimating object pose, where the former necessitates a view-invariant representation, while the latter requires a representation capable…

计算机视觉与模式识别 · 计算机科学 2016-04-20 Mohamed Elhoseiny , Tarek El-Gaaly , Amr Bakry , Ahmed Elgammal

Change detection is one of the central problems in earth observation and was extensively investigated over recent decades. In this paper, we propose a novel recurrent convolutional neural network (ReCNN) architecture, which is trained to…

计算机视觉与模式识别 · 计算机科学 2019-03-27 Lichao Mou , Lorenzo Bruzzone , Xiao Xiang Zhu

As high-throughput biological sequencing becomes faster and cheaper, the need to extract useful information from sequencing becomes ever more paramount, often limited by low-throughput experimental characterizations. For proteins, accurate…

定量方法 · 定量生物学 2017-01-31 Xueliang Liu

Protein secondary structure is crucial to creating an information bridge between the primary and tertiary (3D) structures. Precise prediction of eight-state protein secondary structure (PSS) has significantly utilized in the structural and…

机器学习 · 计算机科学 2020-09-23 Md Aminur Rab Ratul , Maryam Tavakol Elahi , M. Hamed Mozaffari , WonSook Lee

Convolutional Neural Networks (CNNs) have achieved remarkable success across a wide range of machine learning tasks by leveraging hierarchical feature learning through deep architectures. However, the large number of layers and millions of…

机器学习 · 统计学 2025-11-18 Biyi Fang , Truong Vo , Jean Utke , Diego Klabjan

Computational approaches to drug discovery can reduce the time and cost associated with experimental assays and enable the screening of novel chemotypes. Structure-based drug design methods rely on scoring functions to rank and predict…

机器学习 · 统计学 2020-10-19 Matthew Ragoza , Joshua Hochuli , Elisa Idrobo , Jocelyn Sunseri , David Ryan Koes

Recent computational advances in the accurate prediction of protein three-dimensional (3D) structures from amino acid sequences now present a unique opportunity to decipher the interrelationships between proteins. This task entails--but is…

生物大分子 · 定量生物学 2020-05-19 Menuka Jaiswal , Saad Saleem , Yonghyeon Kweon , Eli J Draizen , Stella Veretnik , Cameron Mura , Philip E. Bourne