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The design of biological networks using bacteria as the basic elements of the network is initially motivated by a phenomenon called quorum sensing. Through quorum sensing, each bacterium performs sensing the medium and communicating it to…

信息论 · 计算机科学 2012-05-23 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

Many bacterial species exchange signaling molecules to coordinate population-wide responses. For this process known as quorum sensing the concentration of the respective molecules is crucial. Here we consider the interaction between…

生物物理 · 物理学 2018-11-14 Vera Bettenworth , Matthew McIntosh , Anke Becker , Bruno Eckhardt

Genetic competence is a phenotypic state of a bacterial cell in which it is capable of importing DNA, presumably to hasten its exploration of alternate genes in its quest for survival under stress. Recently, it was proposed that this…

分子网络 · 定量生物学 2009-11-13 Inbal Hecht , Eshel Ben-Jacob , Herbert Levine

The social organization of microorganisms has long been a fascinating and challenging subject in both biology and sociology. In these organisms, the role of the individual is far less dominant than that of the community, which functions as…

生物物理 · 物理学 2025-03-05 Eleonora Alfinito , Matteo Beccaria

A model of clustering dynamics is proposed for a population of spatially distributed active rotators. A transition from excitable to oscillatory dynamics is induced by the increase of the local density of active rotators. It is interpreted…

斑图形成与孤子 · 物理学 2015-06-12 Hidetsugu Sakaguchi , Satomi Maeyama

Many biological and chemical systems could be modeled by a population of oscillators coupled indirectly via a dynamical environment. Essentially, the environment by which the individual elements communicate is heterogeneous. Nevertheless,…

混沌动力学 · 物理学 2017-05-24 Bing-Wei Li , Xiao-Zhi Cao , Chenbo Fu

Features of the CRISPR-Cas system, in which bacteria integrate small segments of phage genome (spacers) into their DNA to neutralize future attacks, suggest that its effect is not limited to individual bacteria but may control the fate and…

种群与进化 · 定量生物学 2018-07-30 Madeleine Bonsma-Fisher , Dominique Soutiere , Sidhartha Goyal

Bacteria possess diverse mechanisms to regulate their motility in response to environmental and physiological signals, enabling them to navigate complex habitats and adapt their behavior. Among these mechanisms, interspecies recognition…

种群与进化 · 定量生物学 2025-12-01 Mattia Mattei , David Soriano Paños , Mahantesh Halappanavar , Alex Arenas

The design of biologically-inspired wireless communication systems using bacteria as the basic element of the system is initially motivated by a phenomenon called \emph{Quorum Sensing}. Due to high randomness in the individual behavior of a…

信息论 · 计算机科学 2016-11-17 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

Bacteria are perhaps the simplest living systems capable of complex behaviour involving sensing and coherent, collective behaviour an example of which is the phenomena of swarming on agar surfaces. Two fundamental questions in bacterial…

Bacteria are easily characterizable model organisms with an impressively complicated set of capabilities. Among their capabilities is quorum sensing, a detailed cell-cell signaling system that may have a common origin with eukaryotic…

神经元与认知 · 定量生物学 2017-09-14 Archana Ram , Andrew Lo

We typically think of cells as responding to external signals independently by regulating their gene expression levels, yet they often locally exchange information and coordinate. Can such spatial coupling be of benefit for conveying…

分子网络 · 定量生物学 2015-01-19 Thomas R. Sokolowski , Gašper Tkačik

In bacterial populations, cells are able to cooperate in order to yield complex collective functionalities. Interest in population-level cellular behaviour is increasing, due to both our expanding knowledge of the underlying biological…

多智能体系统 · 计算机科学 2012-11-07 Angel Goni-Moreno , Martyn Amos

"Secrete-and-sense cells" can communicate by secreting a signaling molecule while also producing a receptor that detects the molecule. The cell can potentially "talk" to itself ("self-communication") or talk to neighboring cells with the…

细胞行为 · 定量生物学 2017-08-10 Berkalp A. Doğaner , Lawrence K. Q. Yan , Hyun Youk

To explain the stability of cooperation is a central task of evolutionary theory. We investigate this question in the case of quorum sensing (QS) bacteria, which regulate cooperative traits in response to population density. Cooperation is…

种群与进化 · 定量生物学 2019-05-02 Burkhard A. Hense , Matthew McIntosh , Johannes Müller , Martin Schuster

Bacterial quorum sensing is the communication that takes place between bacteria as they secrete certain molecules into the intercellular medium that later get absorbed by the secreting cells themselves and by others. Depending on cell…

种群与进化 · 定量生物学 2022-01-26 Eduardo J. Aguilar , Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

Quorum sensing (QS) mimickers can be used as an effective tool to disrupt biofilms which consist of communicating bacteria and extracellular polymeric substances. In this paper, a stochastic biofilm disruption model based on the usage of QS…

定量方法 · 定量生物学 2023-11-27 Fatih Gulec , Andrew W. Eckford

Living systems continuously sense, integrate, and act on chemical information using multiscale biochemical networks whose dynamics are inherently nonlinear, adaptive, and energy-efficient. Yet, most attempts to harness such "wetware" for…

新兴技术 · 计算机科学 2026-02-03 Ceylin Savas , Maryam Javed , Murat Kuscu

We study a generic model for quorum-sensing bacteria in circular confinement. Every bacterium produces signaling molecules, the local concentration of which triggers a response when a certain threshold is reached. If this response lowers…

软凝聚态物质 · 物理学 2016-02-22 Markus Rein , Nike Heinß , Friederike Schmid , Thomas Speck

Minimalistic robot swarms offer a scalable, robust, and cost-effective approach to performing complex tasks with the potential to transform applications in healthcare, disaster response, and environmental monitoring. However, coordinating…

多智能体系统 · 计算机科学 2025-09-10 Raina Zakir , Timoteo Carletti , Marco Dorigo , Andreagiovanni Reina