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Phylogenetic trees are the primary framework for conveying evolutionary relationships. While many tools exist for visualizing phylogenetic trees, most are limited to static graphics, require coding expertise, or are developed for a specific…

种群与进化 · 定量生物学 2026-05-15 Zachary S. L. Foster , Jeff H. Chang , Niklaus J. Grunwald

The usage of the high-level scripting language Python has enabled new mechanisms for data interrogation, discovery and visualization of scientific data. We present yt, an open source, community-developed astrophysical analysis and…

天体物理仪器与方法 · 物理学 2011-12-21 Matthew J. Turk , Britton D. Smith

Perturbative treatments of the lattice dynamics are widely successful for many crystalline materials, their applicability is, however, limited for strongly anharmonic systems, metastable crystal structures and liquids. The full dynamics of…

材料科学 · 物理学 2023-10-10 Erik Fransson , Mattias Slabanja , Paul Erhart , Göran Wahnström

In this research, we do a software writing in Python to calculate the efforts, bending moments and deformations in beams of different materials. This computational tool, that we developed, is of great help in area of computational physical,…

应用物理 · 物理学 2020-09-24 Julian A Rivera S , Alex F Estupiñán L

In this demo, we introduce MELT Dashboard, an interactive Web user interface for ontology alignment evaluation which is created with the existing Matching EvaLuation Toolkit (MELT). Compared to existing, static evaluation interfaces in the…

信息检索 · 计算机科学 2020-04-28 Jan Portisch , Sven Hertling , Heiko Paulheim

Woven shell structures are beneficial for applications requiring lightweight, damage resilience, and design tunability, such as in wearable devices, soft robotics, and aerospace systems. A fundamental component of woven structures is the…

应用物理 · 物理学 2025-12-02 Jaimie Krankel , Guowei Wayne Tu , Evgueni T. Filipov

We present a methodology to simulate the mechanics of knots in elastic rods using geometrically nonlinear, full three-dimensional (3D) finite element analysis. We focus on the mechanical behavior of knots in tight configurations, for which…

软凝聚态物质 · 物理学 2021-02-03 Changyeob Baek , Paul Johanns , Tomohiko G. Sano , Paul Grandgeorge , Pedro M. Reis

We present a finite-element software library, IRENE, which allows to solve numerically the dynamics of a viscous fluid layer embedded in three-dimensional space. Unlike finite-element libraries present in the literature, IRENE can handle…

流体动力学 · 物理学 2025-12-23 Dennis Wörthmüller , Gaetano Ferraro , Pierre Sens , Michele Castellana

In this contribution, the use of discrete simulations to formulate an anisotropic damage model is investigated. It is proposed to use a beam-particle model to perform numerical characterization tests. Indeed, this discrete model explicitly…

经典物理 · 物理学 2021-05-19 C Oliver-Leblond , R Desmorat , Boris Kolev

We investigate numerically the yielding transition of a two dimensional model amorphous solid under external shear. We use a scalar model in terms of values of the total local strain, that we derive from the full (tensorial) description of…

统计力学 · 物理学 2018-07-18 I. Fernández Aguirre , E. A. Jagla

This is a companion Focus Demonstration article to the PyMUSE python package, demonstrating its usage and utilities for VLT/MUSE data analysis, that include a wide range of options for spectra extractions, the creation of different types of…

天体物理仪器与方法 · 物理学 2018-03-20 Ismael Pessa , Nicolas Tejos , Cristobal Moya

A template-based generic programming approach was presented in a previous paper that separates the development effort of programming a physical model from that of computing additional quantities, such as derivatives, needed for embedded…

An asymptotic analysis is performed for thin anisotropic elastic plate clamped along its lateral side and also supported at a small area $\theta_{h}$ of one base with diameter of the same order as the plate thickness $h\ll1.$ A…

偏微分方程分析 · 数学 2017-04-20 G. Buttazzo , G. Cardone , S. A. Nazarov

This study utilizes a simulated dataset to establish Python code for Double Machine Learning (DML) using Anaconda's Jupyter Notebook and the DML software package from GitHub. The research focuses on causal inference experiments for both…

计量经济学 · 经济学 2025-02-28 Shunxin Yao

This study extends the use of symbolic computation in Matrix Structural Analysis (MSA) to plane (2D) trusses, building on previous work that focused on continuous beams. An open-source MATLAB program, hosted on GitHub, was developed to…

计算工程、金融与科学 · 计算机科学 2024-11-26 Vagelis Plevris , Afaq Ahmad

A theoretical analysis of inelastic electron tunneling spectroscopy (IETS) experiments conducted on molecular junctions are presented, where the second derivative of the current with respect to voltage is usually plotted as a function of…

介观与纳米尺度物理 · 物理学 2009-11-13 Kamil Walczak

Debugging is famously one the hardest parts in programming. In this paper, we tackle the question: what does a debugging environment look like when we take interactive visualization as a central design principle? We introduce Anteater, an…

人机交互 · 计算机科学 2024-02-27 Rebecca Faust , Katherine Isaacs , William Z. Bernstein , Michael Sharp , Carlos Scheidegger

AlphaRotate is an open-source Tensorflow benchmark for performing scalable rotation detection on various datasets. It currently provides more than 18 popular rotation detection models under a single, well-documented API designed for use by…

计算机视觉与模式识别 · 计算机科学 2021-11-15 Xue Yang , Yue Zhou , Junchi Yan

Current research efforts in aeroelasticity aim at including higher fidelity aerodynamic results into the simulation frameworks. In the present effort, the Python--based Fluid--Structure Interaction framework of the well known SU2 code has…

计算工程、金融与科学 · 计算机科学 2021-09-28 Nicola Fonzi , Vittorio Cavalieri , Alessandro De Gaspari , Sergio Ricci