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Cellular membranes exhibit a large variety of shapes, strongly coupled to their function. Many biological processes involve dynamic reshaping of membranes, usually mediated by proteins. This interaction works both ways: while proteins…

软凝聚态物质 · 物理学 2018-06-12 Afshin Vahid , Anđela Šarić , Timon Idema

Many organisms have an elastic skeleton that consists of a closed shell of epithelial cells that is filled with fluid, and can actively regulate both elastic forces in the shell and hydrostatic pressure inside it. In this work we introduce…

软凝聚态物质 · 物理学 2023-10-13 Ajoy Maji , Yitzhak Rabin

Compliant environments can mediate interactions between mechanically active cells like fibroblasts. Starting with a phenomenological model for the behaviour of single cells, we use extensive Monte Carlo simulations to predict non-trivial…

软凝聚态物质 · 物理学 2007-05-23 I. B. Bischofs , U. S. Schwarz

Grasping, in both biological and engineered mechanisms, can be highly sensitive to the gripper and object morphology, as well as perception, and motion planning. Here we circumvent the need for feedback or precise planning by using an array…

Understanding stochastic thermodynamics of active Brownian particles (ABPs) system has been an important topic in very recent years. In this article we study a general model of active Brownian particle systems by introducing a…

统计力学 · 物理学 2022-05-11 Zhiyu Cao , Jie Su , Huijun Jiang , Zhonghuai Hou

We consider chirality in active systems by exemplarily studying the phase behavior of planar systems of interacting Brownian circle swimmers with a spherical shape. Continuing previous work presented in [G.-J. Liao, S. H. L. Klapp, Soft…

软凝聚态物质 · 物理学 2022-09-27 Jens Bickmann , Stephan Bröker , Julian Jeggle , Raphael Wittkowski

We present a minimalistic approach to simulations of force transmission through granular systems. We start from a configuration containing cohesive (tensile) contact forces and use an adaptive procedure to find the stable configuration with…

软凝聚态物质 · 物理学 2009-10-31 Alexei V. Tkachenko , Thomas A. Witten

A non-hydrostatic depth-averaged model for dry granular flows is proposed, taking into account vertical acceleration. A variable friction coefficient based on the $\mu(I)$ rheology is considered. The model is obtained from an asymptotic…

Connecting cell behavior to tissue shape and mechanics is a key challenge in the physics of morphogenesis. Cytoskeletal turnover precludes a fixed reference state, and tensions are actively generated independently of strain; so conventional…

软凝聚态物质 · 物理学 2026-05-28 Nikolas H. Claussen , Fridtjof Brauns , Boris I. Shraiman

In active matter systems, deformable boundaries provide a mechanism to organize internal active stresses and perform work on the external environment. To study a minimal model of such a system, we perform particle-based simulations of an…

软凝聚态物质 · 物理学 2022-01-05 Matthew S. E. Peterson , Aparna Baskaran , Michael F. Hagan

Colloidal gels, like many other soft and disordered solids derive their mechanical properties not only from the strength of interparticle attraction, but also from the symmetry of the forces that constrain particle motion. While non-central…

软凝聚态物质 · 物理学 2026-03-17 Ziye Zhuang , Robert A. Campbell , Paniz Haghighi , Safa Jamali , Ali Mohraz

The mechanical properties of collagen fibrils depend on the amount and the distribution of water molecules within the fibrils. Here, we use atomic force microscopy (AFM) to study the effect of hydration on the viscoelastic properties of…

软凝聚态物质 · 物理学 2019-10-03 Manuel R. Uhlig , Robert Magerle

Active colloids belong to a class of non-equilibrium systems where energy uptake, conversion and dissipation occurs at the level of individual colloidal particles, which can lead to particles self-propelled motion and surprising collective…

软凝聚态物质 · 物理学 2022-09-14 T. C. Rebocho , M. Tasinkevych , C. S. Dias

Elastic and dissipative properties of granular assemblies under uniaxial compression are studied both experimentally and by numerical simulations. Following a novel compaction procedure at varying oscillatory pressures, the stress response…

软凝聚态物质 · 物理学 2009-11-11 Jasna Brujic , Ping Wang , Chaoming Song , David L. Johnson , Olivier Sindt , Hernan A. Makse

Coarse-grained (CG) modeling has gained significant attention in recent years due to its wide applicability in enhancing the spatiotemporal scales of molecular simulations. While CG simulations, often performed with Hamiltonian mechanics,…

化学物理 · 物理学 2025-04-01 Jaehyeok Jin , Gregory A. Voth

Biochemistry and mechanics are closely coupled in cell adhesion. At sites of cell-matrix adhesion, mechanical force triggers signaling through the Rho-pathway, which leads to structural reinforcement and increased contractility in the actin…

亚细胞过程 · 定量生物学 2010-02-24 A. Besser , U. S. Schwarz

In vitro cultures of endothelial cells are a widely used model system of the collective behavior of endothelial cells during vasculogenesis and angiogenesis. When seeded in an extracellular matrix, endothelial cells can form blood…

We study the dynamics of proliferating cell collectives whose microscopic constituents' growth is inhibited by macroscopic growth-induced stress. Discrete particle simulations of a growing collective show the emergence of concentric-ring…

生物物理 · 物理学 2024-05-17 Scott Weady , Bryce Palmer , Adam Lamson , Taeyoon Kim , Reza Farhadifar , Michael J. Shelley

We investigate the influence of external forces on the collective dynamics of interacting active Brownian particles in two as well as three spatial dimensions. Via explicit coarse graining, we derive predictive models that are applicable…

软凝聚态物质 · 物理学 2022-02-10 Jens Bickmann , Stephan Bröker , Raphael Wittkowski

Cell cortex contraction is essential for shaping cells, enabling movement, ensuring proper division, maintaining tissue integrity, guiding development, and responding to mechanical signals - all critical for the life and health of…