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Biological systems tightly regulate their physiological state using control signals. This includes the actomyosin cytoskeleton, a contractile active gel that consumes chemical free energy to drive many examples of cellular mechanical…

软凝聚态物质 · 物理学 2025-03-03 James Clarke , Francis Cavanna , Aniket Marne , Anthony Davolio , José Alvarado

We study a continuum model of an extensile active nematic to show that mesoscale turbulence develops in two stages: (i) ordered regions undergo an intrinsic hydrodynamic instability generating walls, lines of stong bend deformations, (ii)…

软凝聚态物质 · 物理学 2015-06-18 Sumesh P. Thampi , Ramin Golestanian , Julia M. Yeomans

Active matter is naturally out of equilibrium which results in the emergence of diverse dynamic steady states, including the omnipresent chaotic state known as the active turbulence. However, much less is known how active systems…

软凝聚态物质 · 物理学 2023-04-07 Nika Kralj , Miha Ravnik , Žiga Kos

The microtubule cytoskeleton is responsible for sustained, long-range intracellular transport of mRNAs, proteins, and organelles in neurons. Neuronal microtubules must be stable enough to ensure reliable transport, but they also undergo…

动力系统 · 数学 2024-03-05 Anna C Nelson , Melissa M Rolls , Maria-Veronica Ciocanel , Scott A McKinley

The cellular cytoskeleton is an active material, driven out of equilibrium by molecular motor proteins. It is not understood how the collective behaviors of cytoskeletal networks emerge from the properties of the network's constituent motor…

亚细胞过程 · 定量生物学 2017-12-19 Peter J. Foster , Wen Yan , Sebastian Fürthauer , Michael J. Shelley , Daniel J. Needleman

We present investigations on volume regulation and beading shape transitions in PC12 neurites conducted using a flow-chamber technique. By disrupting the cell cytoskeleton with specific drugs we investigate the role of its individual…

生物物理 · 物理学 2015-05-19 Pablo Fernandez , Pramod A. Pullarkat

We study a mixture of extensile and contractile cells using a vertex model extended to include active nematic stresses. The two cell populations phase separate over time. While phase separation strengthens monotonically with an increasing…

软凝聚态物质 · 物理学 2024-10-11 Jan Rozman , Julia M. Yeomans

Several experiments have demonstrated the existence of an electro-mechanical effect in many biological tissues and hydrogels, and its actual influence on growth, migration, and pattern formation. Here, to model these interactions and…

软凝聚态物质 · 物理学 2020-07-07 Yangkun Du , Yipin Su , Chaofeng Lu , Weiqiu Chen , Michel Destrade

How can a collection of motile cells, each generating contractile nematic stresses in isolation, become an extensile nematic at the tissue-level? Understanding this seemingly contradictory experimental observation, which occurs irrespective…

软凝聚态物质 · 物理学 2022-02-21 Andrew Killeen , Thibault Bertrand , Chiu Fan Lee

Colloidal gels are formed through the aggregation of attractive particles, whose size ranges from 10~nm to a few micrometers, suspended in a liquid. Such gels are ubiquitous in everyday life applications, from food products to paints or…

软凝聚态物质 · 物理学 2020-11-16 Thomas Gibaud , Thibaut Divoux , Sébastien Manneville

With exquisite precision and reproducibility, cells orchestrate the cooperative action of thousands of nanometer-sized molecular motors to carry out mechanical tasks at much larger length scales, such as cell motility, division and…

软凝聚态物质 · 物理学 2013-01-08 Tim Sanchez , Daniel T. N. Chen , Stephen J. DeCamp , Michael Heymann , Zvonimir Dogic

Homogeneous nucleation, a textbook transition path for phase transitions, is typically understood on thermodynamic grounds through the prism of classical nucleation theory. However, recent studies have suggested the applicability of…

软凝聚态物质 · 物理学 2025-12-08 Luke Langford , Ahmad K. Omar

We study analytically and numerically a generic continuum model of an isotropic active solid with internal stresses generated by non-equilibrium `active' mechano-chemical reactions. Our analysis shows that the gel can be tuned through three…

软凝聚态物质 · 物理学 2015-05-30 Shiladitya Banerjee , Tanniemola B. Liverpool , M. Cristina Marchetti

The loss of plasticity in learning agents, analogous to the solidification of neural pathways in biological brains, significantly impedes learning and adaptation in reinforcement learning due to its non-stationary nature. To address this…

机器学习 · 计算机科学 2025-06-03 Jiashun Liu , Johan Obando-Ceron , Aaron Courville , Ling Pan

We propose a novel mechanism of cell motility, which relies on the coupling of actin polymerization at the cell membrane to geometric confinement. We consider a polymerizing viscoelastic cytoskeletal gel confined in a narrow channel, and…

软凝聚态物质 · 物理学 2009-02-13 R. J. Hawkins , M. Piel , G. Faure-Andre , A. M. Lennon-Dumenil , J. F. Joanny , J. Prost , R. Voituriez

We use a computational phase-field model together with analytical analysis to study how inter-cellular active forces can mediate individual cell morphology and collective motion in a confluent cell monolayer. Contractile inter-cellular…

软凝聚态物质 · 物理学 2021-11-30 Guanming Zhang , Julia M. Yeomans

The interplay between cytoskeletal architecture and the nonlinearity of the interactions due to bucklable filaments plays a key role in modulating the cell's mechanical stability and affecting its structural rearrangements. We study a model…

统计力学 · 物理学 2011-07-01 Shenshen Wang , Tongye Shen , Peter G. Wolynes

We propose a class of microstructurally informed models for the linear elastic mechanical behavior of cross-linked polymer networks such as the actin cytoskeleton. Salient features of the models include the possibility to represent…

其他定量生物学 · 定量生物学 2008-02-27 Ronald Y. Kwon , Adrian J. Lew , Christopher R. Jacobs

Quantifying the outcomes of cells collisions is a crucial step in building the foundations of a kinetic theory of living matter. Here, we develop a mechanical theory of such collisions by first representing individual cells as extended…

生物物理 · 物理学 2019-12-11 Pierre Recho , Thibaut Putelat , Lev Truskinovsky

Self organization mechanisms are essential for the cytoskeleton to adapt to the requirements of living cells. They rely on the intricate interplay of cytoskeletal filaments, crosslinking proteins and molecular motors. Here we present an in…

生物物理 · 物理学 2015-05-28 Simone Köhler , Volker Schaller , Andreas R. Bausch