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Objective detection of specific patterns in statistical distributions, like groupings or gaps or abrupt transitions between different subsets, is a task with a rich range of applications in astronomy: Milky Way stellar population analysis,…

天体物理仪器与方法 · 物理学 2018-05-09 Roman V. Baluev

Agent-based models are a natural choice for modeling complex social systems. In such models simple stochastic interaction rules for a large population of individuals can lead to emergent dynamics on the macroscopic scale, for instance a…

物理与社会 · 物理学 2023-08-02 Luzie Helfmann , Jobst Heitzig , Péter Koltai , Jürgen Kurths , Christof Schütte

The fast simulation of dynamical systems is a key challenge in many scientific and engineering applications, such as weather forecasting, disease control, and drug discovery. With the recent success of deep learning, there is increasing…

机器学习 · 计算机科学 2024-10-02 Zezheng Song , Jiaxin Yuan , Haizhao Yang

We study a model ecosystem by means of dynamical techniques from disordered systems theory. The model describes a set of species subject to competitive interactions through a background of resources, which they feed upon. Additionally…

种群与进化 · 定量生物学 2009-11-13 Yoshimi Yoshino , Tobias Galla , Kei Tokita

Populations of cells regulate gene expression in response to external signals, but their ability to make reliable collective decisions is limited by both intrinsic noise in molecular signaling and variability between individual cells. In…

生物物理 · 物理学 2026-03-20 Olivier Witteveen , Samuel J. Rosen , Ryan S. Lach , Maxwell Z. Wilson , Marianne Bauer

We guide the reader on a journey through mathematical modeling and numerical analysis, emphasizing the crucial interplay of both disciplines. Targeting undergraduate students with basic knowledge in dynamical systems and numerical methods…

历史与综述 · 数学 2025-08-12 Cordula Reisch , Hendrik Ranocha

Mathematical modeling with Ordinary Differential Equations (ODEs) has proven to be extremely successful in a variety of fields, including biology. However, these models are completely deterministic given a certain set of initial conditions.…

机器学习 · 计算机科学 2019-10-15 Hamda Ajmal , Michael Madden , Catherine Enright

The ability to quantify information transmission is crucial for the analysis and design of natural and engineered systems. The information transmission rate is the fundamental measure for systems with time-varying signals, yet computing it…

生物物理 · 物理学 2025-09-26 Manuel Reinhardt , Gašper Tkačik , Pieter Rein ten Wolde

Dengue is a vector-borne viral disease increasing dramatically over the past years due to improvement in human mobility. The movement of host individuals between and within the patches are captured via a residence-time matrix. A system of…

种群与进化 · 定量生物学 2018-10-04 Wolfgang Bock , Yashika Jayathunga

Statistical models for describing the probability distribution over the states of biological systems are commonly used for dimensional reduction. Among these models, pairwise models are very attractive in part because they can be fit using…

定量方法 · 定量生物学 2009-11-30 Yasser Roudi , Erik Aurell , John Hertz

Real-world multi-agent systems are often dynamic and continuous, where the agents co-evolve and undergo changes in their trajectories and interactions over time. For example, the COVID-19 transmission in the U.S. can be viewed as a…

机器学习 · 计算机科学 2024-03-04 Zijie Huang , Jeehyun Hwang , Junkai Zhang , Jinwoo Baik , Weitong Zhang , Dominik Wodarz , Yizhou Sun , Quanquan Gu , Wei Wang

This paper presents a systematic mapping study on the model-driven engineering of safety and security concerns in systems. Integrated modeling and development of both safety and security concerns is an emerging field of research. Our…

软件工程 · 计算机科学 2020-04-21 Atif Mashkoor , Alexander Egyed , Robert Wille

Additive models (AMs) have sparked a lot of interest in machine learning recently, allowing the incorporation of interpretable structures into a wide range of model classes. Many commonly used approaches to fit a wide variety of potentially…

机器学习 · 计算机科学 2025-10-23 Rickmer Schulte , David Rügamer

Clinical management of cancer has continuously evolved for several decades. Biochemical, molecular and genomics approaches have brought and still bring numerous insights into cancerous diseases. It is now accepted that some phenomena,…

Motivated by applications to mathematical biology, we study the averaging problem for slow-fast systems, {\em in the case in which the fast dynamics is a stochastic process with multiple invariant measures}. We consider both the case in…

概率论 · 数学 2023-08-17 B. D. Goddard , M. Ottobre , K. J. Painter , I. Souttar

Dynamical systems see widespread use in natural sciences like physics, biology, chemistry, as well as engineering disciplines such as circuit analysis, computational fluid dynamics, and control. For simple systems, the differential…

We present a subjective selection of methods for complex systems analysis ranging from statistical tools through numerical methods based on AI to both linear and non-linear ODEs and PDEs. All the notions apply the network structure and are…

Flow diagrams are a common tool used to help build and interpret models of dynamical systems, often in biological contexts such as consumer-resource models and similar compartmental models. Typically, their usage is intuitive and informal.…

定量方法 · 定量生物学 2016-06-10 C. Brandon Ogbunugafor , Sean P. Robinson

This paper explores the connection between dynamical system properties and statistical physics of ensembles of such systems. Simple models are used to give novel phase transitions; particularly for finite N particle systems with many…

统计力学 · 物理学 2007-11-06 Ajay Patwardhan

Differential equations (DEs) are commonly used to describe dynamic systems evolving in one (ordinary differential equations or ODEs) or in more than one dimensions (partial differential equations or PDEs). In real data applications the…

统计方法学 · 统计学 2013-11-25 Gianluca Frasso , Jonathan Jaeger , Philippe Lambert