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Influenza epidemics result in a public health and economic burden around the globe. Traditional surveillance techniques, which rely on doctor visits, provide data with a delay of 1-2 weeks. A means of obtaining real-time data and…

种群与进化 · 定量生物学 2019-04-11 Wendy K. Caldwell , Geoffrey Fairchild , Sara Y. Del Valle

Epidemiological early warning systems for dengue fever rely on up-to-date epidemiological data to forecast future incidence. However, epidemiological data typically requires time to be available, due to the application of time-consuming…

社会与信息网络 · 计算机科学 2017-05-23 Julio Albinati , Wagner Meira , Gisele L. Pappa , Mauro Teixeira , Cecilia Marques-Toledo

Infectious disease outbreaks recapitulate biology: they emerge from the multi-level interaction of hosts, pathogens, and their shared environment. As a result, predicting when, where, and how far diseases will spread requires a complex…

物理与社会 · 物理学 2018-10-11 Samuel V. Scarpino , Giovanni Petri

In this paper, we present a new approach to time series forecasting. Time series data are prevalent in many scientific and engineering disciplines. Time series forecasting is a crucial task in modeling time series data, and is an important…

机器学习 · 计算机科学 2020-01-24 Neo Wu , Bradley Green , Xue Ben , Shawn O'Banion

Influenza forecasting in the United States (US) is complex and challenging for reasons including substantial spatial and temporal variability, nested geographic scales of forecast interest, and heterogeneous surveillance participation. Here…

应用统计 · 统计学 2019-10-01 Dave Osthus , Kelly R Moran

Background: Following the outbreak of the coronavirus epidemic in early 2020, municipalities, regional governments and policymakers worldwide had to plan their Non-Pharmaceutical Interventions (NPIs) amidst a scenario of great uncertainty.…

Recent outbreaks of monkeypox and Ebola, and worrying waves of COVID-19, influenza and respiratory syncytial virus, have all led to a sharp increase in the use of epidemiological models to estimate key epidemiological parameters. The…

种群与进化 · 定量生物学 2023-12-01 B. K. M. Case , Jean-Gabriel Young , Laurent Hébert-Dufresne

We propose a framework for Bayesian non-parametric estimation of the rate at which new infections occur assuming that the epidemic is partially observed. The developed methodology relies on modelling the rate at which new infections occur…

统计方法学 · 统计学 2014-12-16 Edward S. Knock , Theodore Kypraios

Timely and robust influenza incidence forecasting is critical for public health decision-making. This paper presents MAESTRO (Multi-modal Adaptive Estimation for Temporal Respiratory Disease Outbreak), a novel, unified framework that…

机器学习 · 计算机科学 2025-09-22 Hong Liu , Kerui Cen , Yanxing Chen , Zige Liu , Dong Chen , Zifeng Yang , Chitin Hon

Compartmental epidemic models have been widely used for predicting the course of epidemics, from estimating the basic reproduction number to guiding intervention policies. Studies commonly acknowledge these models' assumptions but less…

种群与进化 · 定量生物学 2022-11-23 Alexander F. Siegenfeld , Pratyush K. Kollepara , Yaneer Bar-Yam

A prompt public health response to a new epidemic relies on the ability to monitor and predict its evolution in real time as data accumulate. The 2009 A/H1N1 outbreak in the UK revealed pandemic data as noisy, contaminated, potentially…

In this paper, the authors develop a method of detecting correlations between epidemic patterns in different regions that are due to human movement and introduce a null model in which the travel-induced correlations are cancelled. They…

种群与进化 · 定量生物学 2008-06-24 Pascal Crépey , Marc Barthélemy

Early detection and modeling of a contagious epidemic can provide important guidance about quelling the contagion, controlling its spread, or the effective design of countermeasures. A topic of recent interest has been to design social…

The Susceptible-Infectious-Recovered (SIR) equations and their extensions comprise a commonly utilized set of models for understanding and predicting the course of an epidemic. In practice, it is of substantial interest to estimate the…

应用统计 · 统计学 2025-05-07 Omar Melikechi , Alexander L. Young , Tao Tang , Trevor Bowman , David Dunson , James Johndrow

Parameter inference and state estimation in stochastic and partially observed biological systems remain major problems in mathematical biology. In this work, we introduce a two-dimensional lattice graph model for the spread of infectious…

定量方法 · 定量生物学 2026-05-29 Ihtisham Ul Haq , Serge Richard

In this work we describe a non-parametric disease model that links the temporal change of the prevalence of an infectious disease to the incidence and the recovery rates. The model is only based on the common epidemiological measures…

种群与进化 · 定量生物学 2014-01-20 Ralph Brinks

In this paper, a unified susceptible-exposed-infected-susceptible-aware (SEIS-A) framework is proposed to combine epidemic spreading with individuals' on-line self-consultation behaviors. An epidemic spreading prediction model is…

计算工程、金融与科学 · 计算机科学 2019-12-02 Yun Feng , Bing-Chuan Wang

Incorporating decision-making dynamics during an outbreak poses a challenge for epidemiology, faced by several modeling approaches siloed by different disciplines. We propose an epi-economic model where high-frequency choices of individuals…

物理与社会 · 物理学 2025-01-31 Lorenzo Amir Nemati Fard , Alberto Bisin , Michele Starnini , Michele Tizzoni

Accurate and representative data is vital for precisely reporting the impact of influenza in healthcare systems. Northern hemisphere winter 2022/23 experienced the most substantial influenza wave since the COVID-19 pandemic began in 2020.…

Early prediction of the prevalence of influenza reduces its impact. Various studies have been conducted to predict the number of influenza-infected people. However, these studies are not highly accurate especially in the distant future such…

机器学习 · 计算机科学 2019-07-08 Kenjiro Kondo , Akihiko Ishikawa , Masashi Kimura